Variant report

Variant	rs10210842
Chromosome Location	chr2:39733850-39733851
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:39723509..39726047-chr2:39733259..39735822,2	K562	blood:
2	chr2:39733398..39735108-chr2:39738598..39740561,2	K562	blood:
3	chr2:39694431..39697205-chr2:39730797..39733915,4	MCF-7	breast:
4	chr2:39730571..39735062-chr2:39737515..39740200,4	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1060691	0.89[CHD][hapmap]
rs11124685	0.81[CEU][hapmap]
rs11677700	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6753798	0.83[JPT][hapmap]
rs7585512	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7591326	0.85[CEU][hapmap];0.83[JPT][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997934	chr2:39473548-39751029	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv833858	chr2:39684483-39856498	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10210842	MAP4K3	cis	cerebellum	SCAN
rs10210842	C14orf129	trans	parietal	SCAN

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:39712400-39748600	Weak transcription	Aorta	Aorta
2	chr2:39723400-39738400	Weak transcription	Lung	lung
3	chr2:39724800-39750600	Weak transcription	Gastric	stomach
4	chr2:39728400-39736800	Weak transcription	K562	blood
5	chr2:39729600-39737000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr2:39729800-39735600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr2:39730000-39737800	Enhancers	NHDF-Ad	bronchial
8	chr2:39730400-39736400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr2:39731000-39741400	Enhancers	Fetal Stomach	stomach
10	chr2:39731200-39741400	Enhancers	Fetal Lung	lung
11	chr2:39731400-39734000	Enhancers	Osteobl	bone
12	chr2:39731400-39734200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr2:39731600-39735400	Weak transcription	Fetal Muscle Trunk	muscle
14	chr2:39731600-39738400	Weak transcription	Colonic Mucosa	Colon
15	chr2:39731800-39736600	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr2:39731800-39738400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr2:39731800-39738400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr2:39732000-39736400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr2:39732000-39736400	Weak transcription	Fetal Muscle Leg	muscle
20	chr2:39732000-39736600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr2:39732200-39736200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr2:39732200-39739600	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr2:39732400-39734000	Enhancers	Muscle Satellite Cultured Cells	--
24	chr2:39732400-39734200	Enhancers	HepG2	liver
25	chr2:39732400-39736400	Weak transcription	Primary hematopoietic stem cells	blood
26	chr2:39732400-39736400	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr2:39732400-39736600	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr2:39732400-39736800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr2:39732400-39736800	Weak transcription	HUVEC	blood vessel
30	chr2:39732400-39737000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr2:39732400-39738200	Weak transcription	Pancreas	Pancrea
32	chr2:39732400-39738200	Weak transcription	Spleen	Spleen
33	chr2:39732400-39740400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr2:39732400-39740600	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr2:39732400-39740800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr2:39732800-39734200	Weak transcription	Rectal Smooth Muscle	rectum
37	chr2:39732800-39734600	Weak transcription	Adipose Nuclei	Adipose
38	chr2:39732800-39734600	Weak transcription	Fetal Heart	heart
39	chr2:39732800-39736400	Weak transcription	Liver	Liver
40	chr2:39732800-39736400	Weak transcription	Fetal Intestine Large	intestine
41	chr2:39732800-39736400	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr2:39732800-39736400	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr2:39732800-39737200	Weak transcription	Right Ventricle	heart
44	chr2:39732800-39741400	Enhancers	NHLF	lung
45	chr2:39733000-39734000	Weak transcription	Small Intestine	intestine
46	chr2:39733000-39734000	Weak transcription	Stomach Smooth Muscle	stomach
47	chr2:39733000-39734000	Enhancers	A549	lung
48	chr2:39733000-39734200	Weak transcription	Ovary	ovary
49	chr2:39733000-39734600	Weak transcription	Duodenum Mucosa	Duodenum
50	chr2:39733000-39736400	Weak transcription	Fetal Intestine Small	intestine

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