Variant report

Variant	rs10211033
Chromosome Location	chr2:173999233-173999234
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:173997780..173999640-chr2:174139460..174141326,2	K562	blood:
2	chr2:173998706..174001151-chr2:174010395..174012464,2	K562	blood:
3	chr2:173938732..173942486-chr2:173997338..174001096,5	K562	blood:
4	chr2:173996961..173999501-chr2:174001497..174003387,2	K562	blood:

Variant related genes	Relation type
ENSG00000091436	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10930577	0.81[ASN][1000 genomes]
rs10930578	0.81[ASN][1000 genomes]
rs11679192	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11885351	0.81[ASN][1000 genomes]
rs11901217	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13407319	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17760899	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35464261	0.81[ASN][1000 genomes]
rs3754745	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6735275	0.81[ASN][1000 genomes]
rs7604338	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011724	chr2:173916482-174231908	Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv834460	chr2:173919464-174085288	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv834461	chr2:173979734-174038471	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10211033	ZAK	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173974400-174005200	Weak transcription	Fetal Intestine Small	intestine
2	chr2:173981000-174000800	Weak transcription	Fetal Thymus	thymus
3	chr2:173982800-174006400	Weak transcription	Fetal Lung	lung
4	chr2:173984200-174000200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr2:173988200-174004600	Weak transcription	Fetal Intestine Large	intestine
6	chr2:173989200-174006000	Weak transcription	Primary B cells from cord blood	blood
7	chr2:173989600-174003800	Weak transcription	Right Ventricle	heart
8	chr2:173989600-174007600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr2:173991800-173999600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr2:173991800-174000800	Weak transcription	NH-A	brain
11	chr2:173991800-174005200	Weak transcription	K562	blood
12	chr2:173992000-173999400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr2:173992000-173999400	Weak transcription	Osteobl	bone
14	chr2:173992000-174000800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr2:173993200-173999400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr2:173995200-174000600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr2:173995800-173999400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr2:173995800-174000800	Weak transcription	A549	lung
19	chr2:173996000-173999400	Enhancers	NHEK	skin
20	chr2:173996000-174001000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr2:173996000-174001400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr2:173996200-173999400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr2:173996200-174000600	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr2:173996400-174000800	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr2:173996600-173999400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr2:173996600-174001200	Weak transcription	Brain Germinal Matrix	brain
27	chr2:173996600-174012800	Weak transcription	Ovary	ovary
28	chr2:173996600-174013400	Weak transcription	Aorta	Aorta
29	chr2:173996800-174001000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr2:173997200-174000200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr2:173997400-173999600	Weak transcription	Colon Smooth Muscle	Colon
32	chr2:173997400-174000800	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr2:173997400-174000800	Weak transcription	Psoas Muscle	Psoas
34	chr2:173997400-174000800	Weak transcription	Stomach Smooth Muscle	stomach
35	chr2:173997400-174001000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr2:173997400-174001200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr2:173997400-174001200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr2:173997400-174001200	Weak transcription	Fetal Brain Male	brain
39	chr2:173997400-174003400	Weak transcription	Rectal Smooth Muscle	rectum
40	chr2:173997600-173999400	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr2:173997600-173999600	Weak transcription	NHLF	lung
42	chr2:173997600-174000800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr2:173997600-174001600	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr2:173998000-174001400	Weak transcription	Fetal Brain Female	brain
45	chr2:173998200-173999400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr2:173998400-173999400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr2:173998400-173999400	Weak transcription	Primary T cells from cord blood	blood
48	chr2:173998400-173999400	Weak transcription	GM12878-XiMat	blood
49	chr2:173998400-173999400	Weak transcription	HMEC	breast
50	chr2:173998400-174000200	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links