Variant report

Variant	rs10211163
Chromosome Location	chr2:189583540-189583541
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10804023	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11679794	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11686942	0.87[EUR][1000 genomes]
rs12620233	0.87[EUR][1000 genomes]
rs12624203	0.83[EUR][1000 genomes]
rs12693513	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13020633	0.83[EUR][1000 genomes]
rs13026165	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1354907	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1395864	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1395865	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1400946	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1507554	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1507555	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1518011	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1518012	0.83[EUR][1000 genomes]
rs1518013	0.83[EUR][1000 genomes]
rs1518014	0.83[EUR][1000 genomes]
rs1518016	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1848280	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1851878	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1995700	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1995701	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1995702	0.84[EUR][1000 genomes]
rs1996987	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2138959	0.82[EUR][1000 genomes]
rs2138960	0.83[EUR][1000 genomes]
rs2176501	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4667241	0.90[AFR][1000 genomes]
rs4667243	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4667244	0.86[EUR][1000 genomes]
rs4667245	0.86[EUR][1000 genomes]
rs6434294	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6710589	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6711038	0.83[EUR][1000 genomes]
rs6744781	0.87[EUR][1000 genomes]
rs6748400	0.84[EUR][1000 genomes]
rs7583964	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7590689	0.80[EUR][1000 genomes]
rs7598731	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003974	chr2:189331760-189827814	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1000932	chr2:189542210-189677277	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv536088	chr2:189542210-189677277	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv1842768	chr2:189555506-189635696	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2760584	chr2:189564499-189584350	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv437306	chr2:189565261-189584653	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1011304	chr2:189567944-189583704	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1009763	chr2:189569493-189583704	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
9	nsv1005153	chr2:189569493-189583898	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv875606	chr2:189579045-189688463	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv875607	chr2:189579045-189711790	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189582600-189585200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:189583400-189585000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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