Variant report

Variant	rs10211667
Chromosome Location	chr2:37302985-37302986
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10084315	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10176233	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10202693	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12464180	0.82[AMR][1000 genomes]
rs12465097	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12466249	0.84[EUR][1000 genomes]
rs12469391	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12470942	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12474977	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13382546	0.91[AMR][1000 genomes]
rs13398178	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13399537	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13424255	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13425123	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13426400	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13426552	0.82[AMR][1000 genomes]
rs2307469	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4648228	0.84[EUR][1000 genomes]
rs4648233	0.89[EUR][1000 genomes]
rs9309000	0.91[AMR][1000 genomes]
rs9631047	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37221000-37307600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr2:37240400-37304800	Strong transcription	Primary T helper cells fromperipheralblood	blood
3	chr2:37240600-37306000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr2:37240800-37306400	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr2:37240800-37307000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr2:37241200-37306000	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr2:37242200-37305800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr2:37253800-37310200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr2:37272400-37306400	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr2:37272600-37309800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr2:37274200-37308800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr2:37274400-37309600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr2:37275200-37307000	Strong transcription	Adipose Nuclei	Adipose
14	chr2:37275400-37309200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr2:37278600-37310800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr2:37279200-37309200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr2:37279400-37307600	Strong transcription	Fetal Intestine Large	intestine
18	chr2:37281800-37307200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr2:37282000-37308400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr2:37284600-37307200	Weak transcription	Stomach Mucosa	stomach
21	chr2:37287000-37305200	Strong transcription	Primary T cells from cord blood	blood
22	chr2:37287400-37309200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr2:37287600-37306000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr2:37287600-37309600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr2:37287800-37306600	Strong transcription	Primary B cells from cord blood	blood
26	chr2:37289000-37309400	Strong transcription	Fetal Thymus	thymus
27	chr2:37289400-37307600	Strong transcription	Fetal Muscle Trunk	muscle
28	chr2:37289800-37306400	Strong transcription	Brain Anterior Caudate	brain
29	chr2:37290000-37307400	Weak transcription	Fetal Heart	heart
30	chr2:37290800-37304000	Weak transcription	Psoas Muscle	Psoas
31	chr2:37292200-37310200	Weak transcription	Colonic Mucosa	Colon
32	chr2:37292200-37310800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr2:37292400-37307000	Weak transcription	Small Intestine	intestine
34	chr2:37293000-37304400	Weak transcription	Aorta	Aorta
35	chr2:37293000-37307200	Weak transcription	Right Ventricle	heart
36	chr2:37293000-37309800	Weak transcription	Spleen	Spleen
37	chr2:37293200-37308400	Weak transcription	HSMMtube	muscle
38	chr2:37293400-37310400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr2:37293400-37310400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr2:37293800-37303200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr2:37294000-37309200	Weak transcription	Fetal Brain Male	brain
42	chr2:37294400-37303400	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr2:37294800-37303400	Weak transcription	Colon Smooth Muscle	Colon
44	chr2:37294800-37303600	Weak transcription	Esophagus	oesophagus
45	chr2:37295400-37303400	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr2:37295600-37306200	Strong transcription	Primary hematopoietic stem cells	blood
47	chr2:37296000-37303400	Weak transcription	Gastric	stomach
48	chr2:37296200-37303400	Weak transcription	NHLF	lung
49	chr2:37296200-37309600	Weak transcription	Rectal Smooth Muscle	rectum
50	chr2:37297400-37308400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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