Variant report

Variant	rs10214761
Chromosome Location	chr6:73574147-73574148
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12660812	1.00[YRI][hapmap]
rs9442867	1.00[YRI][hapmap]
rs9442869	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
3	nsv470834	chr6:73546750-73596605	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
4	nsv886155	chr6:73551937-73649330	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73569600-73575600	Enhancers	HSMMtube	muscle
2	chr6:73570400-73576600	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr6:73571000-73576200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:73571600-73574200	Enhancers	Psoas Muscle	Psoas
5	chr6:73572000-73575400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:73572000-73590200	Weak transcription	GM12878-XiMat	blood
7	chr6:73572200-73575200	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr6:73572200-73576400	Enhancers	HSMM	muscle
9	chr6:73572400-73575000	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr6:73572400-73576000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:73572600-73574800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr6:73572600-73574800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:73572600-73575200	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr6:73572600-73575200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:73572600-73575200	Weak transcription	NHDF-Ad	bronchial
16	chr6:73572600-73583800	Weak transcription	Primary hematopoietic stem cells	blood
17	chr6:73572800-73575400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:73573000-73574800	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr6:73573200-73574800	Weak transcription	NHEK	skin
20	chr6:73573200-73575200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:73573200-73575400	Weak transcription	Osteobl	bone
22	chr6:73573600-73574400	Enhancers	Liver	Liver
23	chr6:73573800-73575000	Enhancers	Aorta	Aorta
24	chr6:73573800-73576000	Enhancers	Muscle Satellite Cultured Cells	--
25	chr6:73574000-73574200	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr6:73574000-73574200	Enhancers	HMEC	breast
27	chr6:73574000-73576000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links