Variant report

Variant	rs10215548
Chromosome Location	chr7:83570966-83570967
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10254934	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1526499	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6467974	0.84[AFR][1000 genomes]
rs6964605	1.00[ASN][1000 genomes]
rs7796609	0.86[AFR][1000 genomes]
rs7808908	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607707	chr7:83381032-83646816	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv888620	chr7:83459908-83593805	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv888622	chr7:83526743-83631376	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83568600-83572400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:83569800-83571000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:83570200-83571000	Enhancers	Brain Hippocampus Middle	brain
4	chr7:83570400-83571000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:83570400-83571000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr7:83570800-83571200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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