Variant report
| Variant | rs10215927 |
|---|---|
| Chromosome Location | chr7:80945405-80945406 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs1012950 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs1012951 | 0.90[EUR][1000 genomes] |
| rs10235727 | 0.84[CEU][hapmap];0.82[JPT][hapmap];0.88[EUR][1000 genomes] |
| rs10238817 | 0.83[ASN][1000 genomes] |
| rs10270613 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10486819 | 0.84[ASN][1000 genomes] |
| rs10486820 | 0.92[ASN][1000 genomes] |
| rs10954564 | 0.80[AMR][1000 genomes] |
| rs12539379 | 0.83[ASN][1000 genomes] |
| rs16887102 | 0.84[ASN][1000 genomes] |
| rs17155064 | 0.86[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs17155072 | 0.84[ASN][1000 genomes] |
| rs17626401 | 0.82[JPT][hapmap] |
| rs2040901 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2189565 | 0.91[CEU][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs245441 | 0.80[AMR][1000 genomes] |
| rs2886992 | 0.80[CEU][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs3948712 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6943816 | 0.82[JPT][hapmap] |
| rs6950573 | 0.82[JPT][hapmap];0.88[EUR][1000 genomes] |
| rs6960200 | 0.84[ASN][1000 genomes] |
| rs6962364 | 0.82[JPT][hapmap] |
| rs7790064 | 0.84[ASN][1000 genomes] |
| rs7794553 | 0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs995353 | 0.82[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1034690 | chr7:80520004-80987682 | Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
| 2 | nsv1029034 | chr7:80838012-81137146 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv831045 | chr7:80841693-81012404 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv607688 | chr7:80870379-80947517 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:80930000-80961000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr7:80938400-80945600 | Weak transcription | Stomach Mucosa | stomach |
