Variant report

Variant	rs1021610
Chromosome Location	chr2:47435813-47435814
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:47432369..47434937-chr2:47435735..47438988,3	MCF-7	breast:
2	chr2:47423169..47425083-chr2:47433358..47436246,2	K562	blood:
3	chr2:47433849..47436405-chr2:47465797..47467993,2	MCF-7	breast:
4	chr2:47434249..47437300-chr2:47437596..47440193,3	K562	blood:
5	chr2:47426377..47428396-chr2:47434799..47437160,2	K562	blood:
6	chr2:47429443..47431361-chr2:47434372..47436330,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1021609	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1039162	0.88[CHB][hapmap]
rs11899830	0.87[CEU][hapmap];0.83[CHB][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11899833	0.87[CEU][hapmap];0.83[CHB][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12612040	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs13391158	0.90[CEU][hapmap];0.88[CHB][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13422681	0.83[CHB][hapmap];0.82[ASN][1000 genomes]
rs17485833	0.81[EUR][1000 genomes]
rs17557422	0.95[ASN][1000 genomes]
rs1874668	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1874669	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2132923	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2132924	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4952876	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4952877	0.87[CEU][hapmap];0.89[CHB][hapmap];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4953477	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4953478	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4953479	0.88[CHB][hapmap];0.80[ASN][1000 genomes]
rs61371951	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6544972	0.86[CEU][hapmap]
rs6721098	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67882902	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7575670	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs904166	0.91[CEU][hapmap];0.82[CHB][hapmap];0.83[EUR][1000 genomes]
rs904167	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817517	chr2:46819371-47715140	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	152 gene(s)	inside rSNPs	diseases
2	nsv1004828	chr2:47056849-47814482	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
3	nsv457374	chr2:47313624-47448865	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	87 gene(s)	inside rSNPs	diseases
4	nsv581754	chr2:47313624-47448865	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	87 gene(s)	inside rSNPs	diseases
5	esv10649	chr2:47429316-47472670	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv531348	chr2:47433147-47827310	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:47428400-47437800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:47428800-47441000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:47428800-47442000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:47429000-47438400	Weak transcription	Brain Anterior Caudate	brain
5	chr2:47431400-47447200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr2:47433000-47438400	Weak transcription	Liver	Liver
7	chr2:47433200-47436000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr2:47433200-47442200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr2:47433400-47436000	Weak transcription	HSMM	muscle
10	chr2:47433400-47442200	Weak transcription	Duodenum Mucosa	Duodenum
11	chr2:47433400-47445200	Weak transcription	Fetal Kidney	kidney
12	chr2:47433600-47438400	Weak transcription	Fetal Heart	heart
13	chr2:47433800-47436000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr2:47435200-47436000	Enhancers	Hela-S3	cervix
15	chr2:47435600-47436000	Enhancers	A549	lung
16	chr2:47435600-47436200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr2:47435600-47436400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr2:47435600-47437000	Enhancers	NH-A	brain
19	chr2:47435800-47436000	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr2:47435800-47436200	Enhancers	Placenta	Placenta
21	chr2:47435800-47436200	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr2:47435800-47436400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr2:47435800-47436400	Enhancers	Fetal Lung	lung
24	chr2:47435800-47436400	Enhancers	NHLF	lung
25	chr2:47435800-47436600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr2:47435800-47436600	Enhancers	Fetal Intestine Small	intestine
27	chr2:47435800-47436600	Enhancers	Placenta Amnion	Placenta Amnion
28	chr2:47435800-47436600	Enhancers	Stomach Mucosa	stomach
29	chr2:47435800-47436600	Enhancers	K562	blood
30	chr2:47435800-47436600	Enhancers	NHEK	skin
31	chr2:47435800-47437000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr2:47435800-47437000	Enhancers	Muscle Satellite Cultured Cells	--
33	chr2:47435800-47437000	Enhancers	Fetal Intestine Large	intestine
34	chr2:47435800-47437000	Enhancers	HUVEC	blood vessel
35	chr2:47435800-47437200	Enhancers	HepG2	liver
36	chr2:47435800-47437200	Enhancers	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links