Variant report

Variant	rs10216335
Chromosome Location	chr8:49071295-49071296
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10095363	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10099232	0.85[AFR][1000 genomes]
rs10099601	0.82[AFR][1000 genomes]
rs10105954	0.81[AFR][1000 genomes]
rs10107062	0.84[AFR][1000 genomes]
rs10107500	0.82[AFR][1000 genomes]
rs12708172	0.81[AFR][1000 genomes]
rs12708174	0.81[AFR][1000 genomes]
rs28421609	0.81[AFR][1000 genomes]
rs28459674	0.82[AFR][1000 genomes]
rs28539823	0.81[AFR][1000 genomes]
rs28678298	0.85[AFR][1000 genomes]
rs3923232	0.81[AFR][1000 genomes]
rs4527898	0.81[AFR][1000 genomes]
rs4873781	0.82[AFR][1000 genomes]
rs4873782	0.86[AFR][1000 genomes]
rs4873783	0.83[AFR][1000 genomes]
rs4873784	0.86[AFR][1000 genomes]
rs4873785	0.87[AFR][1000 genomes]
rs6994790	0.82[AFR][1000 genomes]
rs6998272	0.81[AMR][1000 genomes]
rs7011426	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931032	chr8:48744329-49091359	Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49066200-49073000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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