Variant report

Variant	rs10216578
Chromosome Location	chr8:121864169-121864170
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10102663	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10216991	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73327006	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73327018	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73327019	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73327022	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73327024	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73327029	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73327032	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73327033	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73327034	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73327035	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73327036	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73327038	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73327045	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73327046	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73327049	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73327052	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9297629	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016172	chr8:121679590-121929916	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv891423	chr8:121847643-121994660	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv465790	chr8:121853405-122185415	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv612114	chr8:121853405-122185415	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv437632	chr8:121861465-121877076	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121838400-121869800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:121858800-121866800	Enhancers	HepG2	liver
3	chr8:121863800-121864400	Enhancers	Fetal Kidney	kidney
4	chr8:121863800-121864600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:121863800-121864600	Enhancers	Liver	Liver
6	chr8:121863800-121864800	Enhancers	Fetal Intestine Large	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links