Variant report

Variant	rs10216825
Chromosome Location	chr8:66746469-66746470
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:66746247..66747758-chr8:66945108..66946576,12	MCF-7	breast:
2	chr8:66746467..66747404-chr8:66945615..66946504,5	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10216874	1.00[AMR][1000 genomes]
rs11996694	1.00[YRI][hapmap]
rs6981354	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1793412	chr8:66705321-66761366	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66719400-66750000	Weak transcription	Hela-S3	cervix
2	chr8:66725200-66747000	Weak transcription	NHDF-Ad	bronchial
3	chr8:66725400-66751200	Weak transcription	Fetal Heart	heart
4	chr8:66729400-66749400	Weak transcription	Fetal Brain Male	brain
5	chr8:66731000-66752600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr8:66731600-66752600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr8:66731800-66752600	Weak transcription	Adipose Nuclei	Adipose
8	chr8:66732600-66751000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr8:66732600-66751000	Weak transcription	Fetal Lung	lung
10	chr8:66733000-66752000	Weak transcription	Fetal Intestine Small	intestine
11	chr8:66734800-66749000	Weak transcription	Small Intestine	intestine
12	chr8:66734800-66752600	Weak transcription	Left Ventricle	heart
13	chr8:66735000-66746600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr8:66738400-66746600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr8:66738600-66752600	Weak transcription	Pancreas	Pancrea
16	chr8:66739600-66749000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr8:66740200-66749000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr8:66740200-66752400	Weak transcription	Fetal Kidney	kidney
19	chr8:66740600-66746800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr8:66741200-66746600	Weak transcription	A549	lung
21	chr8:66741400-66747800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr8:66742200-66752200	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr8:66742400-66746600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr8:66742400-66746600	Weak transcription	Brain Substantia Nigra	brain
25	chr8:66742400-66747000	Weak transcription	Brain Hippocampus Middle	brain
26	chr8:66742400-66749800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr8:66742800-66749400	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr8:66742800-66750000	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr8:66743400-66748800	Enhancers	Primary B cells from peripheral blood	blood
30	chr8:66743400-66750000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr8:66743600-66747200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr8:66743800-66747200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr8:66743800-66750400	Weak transcription	HepG2	liver
34	chr8:66744000-66748000	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr8:66744200-66747200	Enhancers	Primary B cells from cord blood	blood
36	chr8:66744400-66751800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr8:66744600-66746600	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr8:66744600-66746800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
39	chr8:66744600-66750800	Flanking Active TSS	Primary T cells from cord blood	blood
40	chr8:66744600-66751000	Enhancers	iPS-18 Cell Line	embryonic stem cell
41	chr8:66744800-66747000	Enhancers	Primary T cells fromperipheralblood	blood
42	chr8:66744800-66747800	Enhancers	Fetal Thymus	thymus
43	chr8:66744800-66749200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
44	chr8:66744800-66751000	Enhancers	iPS-20b Cell Line	embryonic stem cell
45	chr8:66745000-66746600	Enhancers	Primary T killer memory cells from peripheral blood	blood
46	chr8:66745000-66747000	Enhancers	Thymus	Thymus
47	chr8:66745000-66750400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr8:66745200-66746600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr8:66745200-66747600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr8:66745200-66747800	Weak transcription	H9 Cell Line	embryonic stem cell

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