Variant report

Variant	rs10217136
Chromosome Location	chr9:110055279-110055280
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:110044182..110049393-chr9:110054071..110058486,10	MCF-7	breast:
2	chr9:110050203..110052215-chr9:110053888..110055858,2	K562	blood:
3	chr9:110054408..110057220-chr9:110063474..110066259,2	K562	blood:
4	chr9:110001230..110003494-chr9:110052662..110055320,2	MCF-7	breast:
5	chr9:110054445..110058128-chr9:110059472..110062917,7	K562	blood:

Variant related genes	Relation type
ENSG00000119318	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10739239	0.93[CEU][hapmap];0.92[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7023656	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869351	chr9:109593212-110191170	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv831682	chr9:109937181-110075453	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv508560	chr9:110006490-110060539	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv519266	chr9:110049477-110085255	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110047600-110067200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:110048000-110056000	Weak transcription	Aorta	Aorta
3	chr9:110048000-110058400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr9:110048400-110058000	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr9:110048600-110058000	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr9:110048800-110056800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr9:110048800-110058600	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr9:110048800-110059200	Enhancers	HepG2	liver
9	chr9:110048800-110061000	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr9:110048800-110067800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr9:110048800-110069600	Weak transcription	Fetal Brain Male	brain
12	chr9:110049000-110055400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr9:110049000-110058800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr9:110049000-110061200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr9:110049000-110061400	Weak transcription	NH-A	brain
16	chr9:110049000-110063000	Enhancers	Liver	Liver
17	chr9:110049000-110063200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr9:110049000-110063200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr9:110049200-110059200	Weak transcription	Fetal Intestine Small	intestine
20	chr9:110049200-110067000	Weak transcription	Fetal Muscle Leg	muscle
21	chr9:110049400-110067800	Weak transcription	Primary hematopoietic stem cells	blood
22	chr9:110049800-110058000	Weak transcription	Stomach Mucosa	stomach
23	chr9:110050200-110063200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr9:110051200-110058400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr9:110051200-110066000	Weak transcription	Fetal Intestine Large	intestine
26	chr9:110051200-110067000	Weak transcription	Thymus	Thymus
27	chr9:110051600-110079200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr9:110051800-110055400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr9:110051800-110057600	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr9:110052000-110055600	Enhancers	Colon Smooth Muscle	Colon
31	chr9:110052000-110056800	Weak transcription	Primary B cells from cord blood	blood
32	chr9:110052000-110066800	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr9:110052200-110061200	Weak transcription	Dnd41	blood
34	chr9:110052400-110055400	Weak transcription	Pancreas	Pancrea
35	chr9:110052600-110055400	Weak transcription	Ovary	ovary
36	chr9:110052600-110056600	Weak transcription	Esophagus	oesophagus
37	chr9:110052600-110056600	Weak transcription	Gastric	stomach
38	chr9:110052600-110063200	Weak transcription	Placenta	Placenta
39	chr9:110052600-110067000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr9:110052600-110067000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr9:110052600-110068600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr9:110052600-110068600	Weak transcription	Brain Germinal Matrix	brain
43	chr9:110052600-110068800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr9:110052600-110069200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr9:110052800-110056200	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr9:110052800-110056200	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr9:110052800-110056600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr9:110052800-110056600	Weak transcription	Brain Anterior Caudate	brain
49	chr9:110052800-110057200	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr9:110052800-110061200	Weak transcription	Brain Inferior Temporal Lobe	brain

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