Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:16833151..16834904-chr9:16839778..16842584,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10217423	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10810643	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10810644	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv892650	chr9:16696187-16950860	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv892651	chr9:16816755-16869240	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16829200-16852800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:16829800-16864200	Weak transcription	NH-A	brain
3	chr9:16831000-16859600	Weak transcription	HSMM	muscle
4	chr9:16831200-16852600	Weak transcription	Fetal Lung	lung
5	chr9:16831200-16863400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr9:16831200-16864400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:16833800-16863800	Weak transcription	NHLF	lung
8	chr9:16834600-16852600	Weak transcription	Fetal Stomach	stomach
9	chr9:16835200-16848400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr9:16836200-16864400	Weak transcription	NHDF-Ad	bronchial
11	chr9:16838200-16842400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr9:16838800-16852000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr9:16839200-16846400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr9:16839800-16842200	Enhancers	Colon Smooth Muscle	Colon
15	chr9:16840200-16840600	Enhancers	Ovary	ovary
16	chr9:16840200-16841600	Enhancers	Rectal Smooth Muscle	rectum
17	chr9:16840200-16842600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr9:16840400-16840600	Enhancers	Fetal Intestine Large	intestine
19	chr9:16840400-16841000	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr9:16840400-16852000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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