Variant report

Variant	rs10217334
Chromosome Location	chr9:14809548-14809549
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10121165	0.81[ASN][1000 genomes]
rs10121741	0.92[ASN][1000 genomes]
rs10124389	0.82[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs10217611	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10810252	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10961725	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10961730	1.00[ASW][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10961732	0.86[ASN][1000 genomes]
rs10961735	0.82[ASN][1000 genomes]
rs12236053	0.81[CHB][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];0.80[AMR][1000 genomes]
rs12238508	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12347233	0.94[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28537494	0.81[ASN][1000 genomes]
rs4740592	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4741435	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7041710	0.87[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs72711381	0.88[ASN][1000 genomes]
rs7868862	0.81[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv613637	chr9:14524438-15011915	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv2761502	chr9:14757877-14827373	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv831518	chr9:14760638-14953501	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv1030626	chr9:14786215-14853681	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv540071	chr9:14786215-14853681	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	nsv892617	chr9:14791348-14889834	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	nsv613646	chr9:14800779-14852141	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv1031440	chr9:14805107-14859190	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv540072	chr9:14805107-14859190	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14745000-14809800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr9:14755800-14812400	Weak transcription	Pancreas	Pancrea
3	chr9:14764800-14809600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:14779800-14853200	Weak transcription	Placenta	Placenta
5	chr9:14780400-14843200	Weak transcription	Fetal Heart	heart
6	chr9:14782000-14822000	Weak transcription	Fetal Brain Male	brain
7	chr9:14782800-14822000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr9:14786800-14814400	Strong transcription	Fetal Lung	lung
9	chr9:14793000-14822600	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr9:14796800-14811800	Weak transcription	Aorta	Aorta
11	chr9:14799400-14812200	Weak transcription	Fetal Muscle Trunk	muscle
12	chr9:14801800-14811800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr9:14801800-14811800	Weak transcription	Colon Smooth Muscle	Colon
14	chr9:14801800-14812600	Weak transcription	Fetal Stomach	stomach
15	chr9:14801800-14857200	Strong transcription	HepG2	liver
16	chr9:14802800-14809600	Strong transcription	Fetal Kidney	kidney
17	chr9:14803600-14818000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr9:14805600-14810200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr9:14806600-14813400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr9:14806800-14810200	Weak transcription	Fetal Muscle Leg	muscle
21	chr9:14806800-14814000	Strong transcription	Adipose Nuclei	Adipose
22	chr9:14807200-14822800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr9:14807400-14809800	Weak transcription	Duodenum Mucosa	Duodenum
24	chr9:14807400-14868600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr9:14807800-14811800	Weak transcription	Left Ventricle	heart
26	chr9:14807800-14813400	Weak transcription	Right Ventricle	heart
27	chr9:14808000-14810000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr9:14808400-14810600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr9:14809000-14811800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr9:14809200-14847600	Weak transcription	Fetal Intestine Small	intestine
31	chr9:14809400-14810000	Weak transcription	Fetal Intestine Large	intestine

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