Variant report

Variant	rs10218889
Chromosome Location	chr10:44502466-44502467
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs55719822	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55810528	1.00[EUR][1000 genomes]
rs66536810	0.82[AMR][1000 genomes]
rs67269496	0.82[AMR][1000 genomes]
rs72781190	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72781191	1.00[EUR][1000 genomes]
rs72782918	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72782960	0.94[EUR][1000 genomes]
rs72784807	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72784819	0.82[AMR][1000 genomes]
rs72786825	0.83[EUR][1000 genomes]
rs72786836	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466884	chr10:44473036-44515130	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv550698	chr10:44473036-44515130	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44494200-44502600	Weak transcription	Right Atrium	heart
2	chr10:44495800-44504400	Weak transcription	Pancreas	Pancrea
3	chr10:44500000-44502600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr10:44500000-44503200	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr10:44500800-44503800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:44500800-44503800	Weak transcription	Spleen	Spleen
7	chr10:44501000-44508400	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr10:44501200-44503800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr10:44501600-44511600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:44502200-44502600	Enhancers	Placenta Amnion	Placenta Amnion
11	chr10:44502200-44503800	Weak transcription	Fetal Muscle Trunk	muscle
12	chr10:44502200-44506800	Enhancers	Adipose Nuclei	Adipose
13	chr10:44502200-44507400	Enhancers	Fetal Muscle Leg	muscle
14	chr10:44502400-44502600	Enhancers	Fetal Brain Male	brain
15	chr10:44502400-44502600	Enhancers	Fetal Brain Female	brain
16	chr10:44502400-44503800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:44502400-44506600	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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