Variant report

Variant	rs10222712
Chromosome Location	chr4:120008282-120008283
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10011228	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10857063	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10857064	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11098480	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11098481	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11098482	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3921954	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4833606	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4834742	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4834743	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6856723	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7441142	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7671172	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7692209	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7692440	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7693205	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7693307	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7693344	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	nsv1007214	chr4:120007913-120112460	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1008115	chr4:120007913-120143849	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
5	nsv1003827	chr4:120008227-120112460	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120003400-120014200	Weak transcription	Left Ventricle	heart
2	chr4:120003400-120014400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:120003600-120014600	Weak transcription	Right Atrium	heart
4	chr4:120004200-120013200	Weak transcription	HepG2	liver
5	chr4:120007000-120009000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:120007400-120009200	Enhancers	Stomach Mucosa	stomach
7	chr4:120007800-120008600	Enhancers	Fetal Heart	heart
8	chr4:120007800-120009000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr4:120007800-120009000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr4:120007800-120009200	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr4:120007800-120009400	Enhancers	A549	lung
12	chr4:120008000-120009000	Enhancers	Fetal Intestine Small	intestine
13	chr4:120008000-120009200	Enhancers	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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