Variant report

Variant	rs10222755
Chromosome Location	chr4:80329502-80329503
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:183)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HMGN3	chr4:80329298-80329503	K562	blood:	n/a	n/a

(count:183 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr4:80329481-80329531	GM12891	blood:	n/a
2	chr4:80329481-80329531	T-47D	breast:	n/a
3	chr4:80329481-80329531	CMK	blood:	n/a
4	chr4:80329486-80329536	HAEpiC	amniotic membrane:	n/a
5	chr4:80329486-80329536	GM19239	blood:	n/a
6	chr4:80329483-80329533	SK-N-SH	brain:	n/a
7	chr4:80329483-80329533	AG04450	lung:	fetal
8	chr4:80329483-80329533	NB4	blood:	n/a
9	chr4:80329486-80329536	AG09309	skin:	n/a
10	chr4:80329481-80329531	PrEC	prostate:	n/a
11	chr4:80329483-80329533	HRE	kidney:	n/a
12	chr4:80329486-80329536	SKMC	muscle:	n/a
13	chr4:80329481-80329531	GM19239	blood:	n/a
14	chr4:80329483-80329533	IMR90	lung:	fetal
15	chr4:80329486-80329536	ProgFib	skin:	n/a
16	chr4:80329486-80329536	HIPEpiC	eye:	n/a
17	chr4:80329486-80329536	SK-N-SH_RA	brain:	n/a
18	chr4:80329481-80329531	AoSMC	blood vessel:	n/a
19	chr4:80329483-80329533	Hepatocyte	liver:	n/a
20	chr4:80329481-80329531	HUVEC	blood vessel:	n/a
21	chr4:80329483-80329533	BE2_C	brain:	n/a
22	chr4:80329483-80329533	BJ	skin:	n/a
23	chr4:80329483-80329533	GM12878	blood:	n/a
24	chr4:80329483-80329533	HMEC	breast:	n/a
25	chr4:80329481-80329531	HPAEpiC	pulmonary alveolar:	n/a
26	chr4:80329486-80329536	HRCEpiC	kidney:	n/a
27	chr4:80329486-80329536	H1-hESC	embryonic stem cell:	embryo
28	chr4:80329481-80329531	LNCaP	prostate:	n/a
29	chr4:80329481-80329531	SK-N-SH_RA	brain:	n/a
30	chr4:80329486-80329536	ovcar-3	ovarian:	n/a
31	chr4:80329486-80329536	AoSMC	blood vessel:	n/a
32	chr4:80329483-80329533	AG04449	skin:	fetal
33	chr4:80329481-80329531	HCF	heart:	n/a
34	chr4:80329481-80329531	AG04449	skin:	fetal
35	chr4:80329481-80329531	HRE	kidney:	n/a
36	chr4:80329481-80329531	NH-A	brain:	n/a
37	chr4:80329481-80329531	MCF10A-Er-Src	breast:	n/a
38	chr4:80329481-80329531	NHDF-neo	bronchial:	n/a
39	chr4:80329486-80329536	GM12878	blood:	n/a
40	chr4:80329486-80329536	ECC-1	luminal epithelium:	n/a
41	chr4:80329483-80329533	AG10803	skin:	n/a
42	chr4:80329486-80329536	U87	brain:	n/a
43	chr4:80329481-80329531	ovcar-3	ovarian:	n/a
44	chr4:80329483-80329533	SAEC	small airway:	n/a
45	chr4:80329483-80329533	LNCaP	prostate:	n/a
46	chr4:80329486-80329536	SK-N-MC	brain:	n/a
47	chr4:80329486-80329536	HEK293	kidney:	embryo
48	chr4:80329483-80329533	MCF-7	breast:	n/a
49	chr4:80329483-80329533	HUVEC	blood vessel:	n/a
50	chr4:80329486-80329536	SAEC	small airway:	n/a

No data

Variant related genes	Relation type
GK2	TF binding region
GK2	CpG island

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10028914	0.85[EUR][1000 genomes]
rs10033347	0.81[EUR][1000 genomes]
rs17496456	0.87[EUR][1000 genomes]
rs28690339	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999174	chr4:80212935-80512356	Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3432913	chr4:80274683-80416584	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv879506	chr4:80316417-80604625	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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