Variant report

Variant	rs10222975
Chromosome Location	chr4:55827345-55827346
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs55812330	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73145510	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7671693	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9631802	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv948758	chr4:55748430-55887962	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55817800-55836800	Weak transcription	Psoas Muscle	Psoas
2	chr4:55823800-55827800	Enhancers	Primary T cells from cord blood	blood
3	chr4:55824200-55827600	Enhancers	NHLF	lung
4	chr4:55824200-55828000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:55824400-55827600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr4:55825000-55827800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr4:55826200-55827800	Enhancers	NHDF-Ad	bronchial
8	chr4:55827000-55827400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr4:55827000-55827400	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr4:55827000-55827600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr4:55827000-55827600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr4:55827000-55827800	Enhancers	Primary hematopoietic stem cells	blood
13	chr4:55827000-55827800	Enhancers	Primary T helper cells PMA-I stimulated	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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