Variant report

Variant	rs10223316
Chromosome Location	chr5:29199551-29199552
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:29191166..29194055-chr5:29197511..29200144,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10039707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10068410	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10072418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10076771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10472150	1.00[AMR][1000 genomes]
rs10472676	1.00[AMR][1000 genomes]
rs1154773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12332181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1382557	1.00[AFR][1000 genomes]
rs16898780	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16898784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28451994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28497974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28580694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28657520	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28705936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28758476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9292304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9292305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9292306	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023990	chr5:28917253-29220447	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3528360	chr5:29069255-29548659	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	esv3528361	chr5:29069255-29548659	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
4	nsv1016603	chr5:29102713-29843965	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
5	nsv537712	chr5:29102713-29843965	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
6	nsv1030526	chr5:29125802-29204186	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv1031329	chr5:29177677-29760923	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	nsv537713	chr5:29177677-29760923	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
9	nsv880414	chr5:29194872-29495564	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:29198600-29199800	Enhancers	Hela-S3	cervix

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