Variant report

Variant	rs10223577
Chromosome Location	chr6:133039199-133039200
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs45587637	1.00[EUR][1000 genomes]
rs6569831	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6569838	0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6917978	0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6918343	0.93[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72992354	0.92[AFR][1000 genomes]
rs767147	0.94[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9321361	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9321362	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133034800-133053200	Weak transcription	Placenta	Placenta
2	chr6:133035400-133044200	Weak transcription	Primary B cells from cord blood	blood
3	chr6:133035600-133040400	Weak transcription	Fetal Intestine Large	intestine
4	chr6:133035600-133040400	Weak transcription	Fetal Intestine Small	intestine
5	chr6:133035600-133041200	Enhancers	Liver	Liver
6	chr6:133037600-133041800	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr6:133037600-133043200	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr6:133037600-133043200	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr6:133038000-133042000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:133038000-133053400	Weak transcription	Primary hematopoietic stem cells	blood
11	chr6:133038200-133041800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:133038600-133039400	Enhancers	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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