Variant report

Variant	rs10223871
Chromosome Location	chr6:24227823-24227824
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24227048..24229838-chr6:24232947..24235192,3	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2996451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4513785	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59296932	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv427746	chr6:24221299-24305709	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24206200-24231400	Weak transcription	Fetal Intestine Small	intestine
2	chr6:24214600-24235400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:24217800-24231600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr6:24224800-24228800	Strong transcription	HepG2	liver
5	chr6:24225000-24229000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:24225000-24229200	Weak transcription	Pancreas	Pancrea
7	chr6:24226800-24229600	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr6:24227000-24228800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:24227000-24230400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:24227200-24229200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:24227600-24229000	Enhancers	Brain Germinal Matrix	brain
12	chr6:24227600-24229200	Enhancers	Brain Anterior Caudate	brain
13	chr6:24227600-24229400	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr6:24227600-24229400	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr6:24227600-24229400	Enhancers	Fetal Kidney	kidney
16	chr6:24227600-24229600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:24227800-24228200	Enhancers	Brain Hippocampus Middle	brain
18	chr6:24227800-24229000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:24227800-24229000	Weak transcription	Ovary	ovary
20	chr6:24227800-24229400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr6:24227800-24229600	Enhancers	Fetal Lung	lung

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