The 2.0 version of rSNPBase

Variant report

Variant rs10225612
Chromosome Location chr7:22193662-22193663
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:75 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr7:22159800-22214000 Weak transcription Small Intestine intestine
2 chr7:22162200-22198000 Weak transcription Rectal Smooth Muscle rectum
3 chr7:22168000-22195800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
4 chr7:22168000-22195800 Weak transcription NHEK skin
5 chr7:22176200-22198200 Weak transcription Skeletal Muscle Male skeletal muscle
6 chr7:22176400-22203200 Weak transcription Stomach Mucosa stomach
7 chr7:22177800-22195800 Weak transcription HMEC breast
8 chr7:22179600-22206600 Weak transcription Fetal Stomach stomach
9 chr7:22181400-22199000 Weak transcription Gastric stomach
10 chr7:22184400-22195800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
11 chr7:22184600-22240600 Weak transcription Colonic Mucosa Colon
12 chr7:22187000-22204800 Weak transcription Duodenum Smooth Muscle Duodenum
13 chr7:22187200-22199000 Weak transcription Fetal Brain Male brain
14 chr7:22187800-22195600 Weak transcription NHDF-Ad bronchial
15 chr7:22187800-22196200 Weak transcription Fetal Kidney kidney
16 chr7:22188000-22195600 Weak transcription GM12878-XiMat blood
17 chr7:22189400-22196000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
18 chr7:22189400-22196000 Weak transcription Left Ventricle heart
19 chr7:22189400-22197200 Weak transcription Breast Myoepithelial Primary Cells Breast
20 chr7:22190000-22195400 Weak transcription Duodenum Mucosa Duodenum
21 chr7:22190000-22195800 Weak transcription Pancreas Pancrea
22 chr7:22190000-22195800 Weak transcription Spleen Spleen
23 chr7:22190000-22196000 Weak transcription Esophagus oesophagus
24 chr7:22190000-22232800 Weak transcription Aorta Aorta
25 chr7:22190200-22195600 Weak transcription Osteobl bone
26 chr7:22191400-22195800 Enhancers Brain Hippocampus Middle brain
27 chr7:22191800-22194200 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
28 chr7:22192400-22194400 Enhancers HUES64 Cell Line embryonic stem cell
29 chr7:22192400-22195000 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
30 chr7:22192600-22193800 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
31 chr7:22192600-22194200 Enhancers H1 Cell Line embryonic stem cell
32 chr7:22192600-22194200 Strong transcription Fetal Adrenal Gland Adrenal Gland
33 chr7:22192600-22194200 Strong transcription Fetal Intestine Small intestine
34 chr7:22192600-22194200 Strong transcription Lung lung
35 chr7:22192600-22194400 Enhancers iPS-18 Cell Line embryonic stem cell
36 chr7:22192600-22194400 Enhancers ES-UCSF4 Cell Line embryonic stem cell
37 chr7:22192600-22194400 Enhancers Cortex derived primary cultured neurospheres brain
38 chr7:22192600-22194400 Strong transcription Rectal Mucosa Donor 31 rectum
39 chr7:22192600-22194400 Strong transcription Sigmoid Colon Sigmoid Colon
40 chr7:22192600-22194600 Enhancers HUES48 Cell Line embryonic stem cell
41 chr7:22192600-22194800 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
42 chr7:22192600-22194800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
43 chr7:22192600-22195000 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
44 chr7:22192600-22198200 Genic enhancers Brain Anterior Caudate brain
45 chr7:22192600-22199400 Strong transcription HepG2 liver
46 chr7:22192600-22200800 Strong transcription Fetal Intestine Large intestine
47 chr7:22192600-22208200 Strong transcription Liver Liver
48 chr7:22192800-22193800 Enhancers Brain Substantia Nigra brain
49 chr7:22192800-22194400 Enhancers ES-I3 Cell Line embryonic stem cell
50 chr7:22192800-22194400 Enhancers iPS-15b Cell Line embryonic stem cell

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015