Variant report
| Variant | rs10225755 |
|---|---|
| Chromosome Location | chr7:124165999-124166000 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10236164 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs10236310 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs10458294 | 0.81[EUR][1000 genomes] |
| rs10954037 | 0.88[EUR][1000 genomes] |
| rs1181797 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1181803 | 0.83[EUR][1000 genomes] |
| rs1181804 | 0.83[EUR][1000 genomes] |
| rs1181805 | 0.85[EUR][1000 genomes] |
| rs1181807 | 0.88[EUR][1000 genomes] |
| rs12538605 | 0.86[ASN][1000 genomes] |
| rs12706607 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs12706608 | 0.87[EUR][1000 genomes] |
| rs12706609 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs13243734 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs17147239 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs17394006 | 0.86[EUR][1000 genomes] |
| rs17472367 | 0.86[EUR][1000 genomes] |
| rs2159182 | 0.90[EUR][1000 genomes] |
| rs2402732 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs4731191 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs6948690 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs6968639 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs73219044 | 0.81[EUR][1000 genomes] |
| rs7777394 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs7777417 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1795113 | chr7:123885477-124188665 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv429809 | chr7:123937674-124835925 | Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 49 gene(s) | inside rSNPs | diseases |
| 3 | esv1808414 | chr7:123957376-124188665 | Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv525687 | chr7:124138187-124196444 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv608340 | chr7:124138187-124196444 | Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:2)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs10225755 | TP53AIP1 | trans | parietal | SCAN |
| rs10225755 | PTPRZ1 | cis | parietal | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:124165400-124166200 | Weak transcription | Pancreas | Pancrea |
| 2 | chr7:124165800-124166400 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |
