Variant report

Variant	rs10225781
Chromosome Location	chr7:40008028-40008029
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:39988142..39991064-chr7:40007061..40008566,2	MCF-7	breast:
2	chr7:39999018..40002091-chr7:40005223..40009207,3	K562	blood:
3	chr7:40006687..40008469-chr7:40010129..40011913,2	K562	blood:
4	chr7:39989510..39991644-chr7:40006968..40009873,3	K562	blood:
5	chr7:40005726..40008469-chr7:40010129..40013269,3	K562	blood:

Variant related genes	Relation type
ENSG00000259826	Chromatin interaction
ENSG00000065883	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10229804	1.00[AFR][1000 genomes]
rs28767246	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887973	chr7:39772654-40110720	Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
2	nsv887975	chr7:39858378-40124137	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
3	nsv887976	chr7:39874986-40018693	Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
4	nsv887977	chr7:39885541-40018693	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
5	nsv1015322	chr7:40006195-40141195	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	esv2761319	chr7:40006195-40142139	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39993600-40048200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr7:39994200-40027200	Weak transcription	HSMM	muscle
3	chr7:39994600-40009000	Weak transcription	HMEC	breast
4	chr7:39994800-40008400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr7:39994800-40008400	Weak transcription	NHEK	skin
6	chr7:39994800-40018000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr7:39995000-40009000	Weak transcription	Osteobl	bone
8	chr7:39995000-40018200	Weak transcription	Spleen	Spleen
9	chr7:39995200-40009000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr7:39995200-40010400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr7:39995200-40042600	Weak transcription	K562	blood
12	chr7:39996000-40008800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr7:39996800-40014800	Weak transcription	Right Ventricle	heart
14	chr7:39996800-40016600	Weak transcription	Gastric	stomach
15	chr7:39997200-40015200	Weak transcription	Small Intestine	intestine
16	chr7:39997800-40027400	Weak transcription	Duodenum Mucosa	Duodenum
17	chr7:39998000-40027200	Weak transcription	Hela-S3	cervix
18	chr7:39998200-40009000	Weak transcription	Brain Angular Gyrus	brain
19	chr7:39998200-40009800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr7:39998200-40010400	Weak transcription	Colon Smooth Muscle	Colon
21	chr7:39998200-40013400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr7:39998400-40010200	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr7:39999800-40013600	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr7:40000400-40016600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr7:40000600-40011400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr7:40001000-40008800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr7:40001000-40009600	Weak transcription	Ovary	ovary
28	chr7:40001000-40010800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr7:40001000-40016600	Weak transcription	Dnd41	blood
30	chr7:40001000-40018600	Weak transcription	Thymus	Thymus
31	chr7:40001200-40008400	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr7:40001200-40008400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr7:40001200-40009000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr7:40001200-40009200	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr7:40001200-40014800	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr7:40001200-40016800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr7:40001200-40018200	Weak transcription	Fetal Thymus	thymus
38	chr7:40005600-40008400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
39	chr7:40005600-40009000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
40	chr7:40005600-40021000	Enhancers	Primary T helper cells PMA-I stimulated	--
41	chr7:40005600-40021000	Enhancers	Primary T helper cells fromperipheralblood	blood
42	chr7:40006200-40008800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
43	chr7:40006200-40009600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
44	chr7:40006200-40015000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
45	chr7:40006600-40009200	Enhancers	Primary T helper naive cells from peripheral blood	blood
46	chr7:40006600-40009600	Enhancers	Primary T killer memory cells from peripheral blood	blood
47	chr7:40006600-40011400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
48	chr7:40006600-40018200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
49	chr7:40006600-40019800	Enhancers	Primary B cells from peripheral blood	blood
50	chr7:40006800-40031200	Weak transcription	Fetal Stomach	stomach

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