Variant report

Variant	rs10227428
Chromosome Location	chr7:15089975-15089976
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs218085	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7788363	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7792421	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:46 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758104	chr7:14896877-15299786	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2759512	chr7:14896877-15299786	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1032569	chr7:14905287-15597069	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1021172	chr7:14944318-15548794	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv538743	chr7:14944318-15548794	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv464389	chr7:15008138-15098004	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv606285	chr7:15008138-15098004	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv517876	chr7:15010824-15198589	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv830910	chr7:15011028-15212309	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv887721	chr7:15025332-15163610	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	esv2761127	chr7:15051210-15152813	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv1029986	chr7:15051210-15152813	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv522499	chr7:15051754-15148454	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv1018434	chr7:15054190-15144078	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv606286	chr7:15059272-15090452	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
16	nsv606287	chr7:15063085-15121951	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv606288	chr7:15064255-15101286	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv887722	chr7:15064255-15105524	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	esv2756799	chr7:15071860-15172274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
20	esv34790	chr7:15074560-15157160	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
21	nsv606289	chr7:15074567-15152288	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
22	nsv1025895	chr7:15074567-15159694	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
23	nsv606290	chr7:15078991-15156372	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
24	nsv818486	chr7:15078991-15159483	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
25	nsv8057	chr7:15086972-15094769	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
26	nsv464391	chr7:15087599-15121951	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
27	nsv606291	chr7:15087599-15121951	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
28	nsv887723	chr7:15087599-15124747	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
29	esv3517612	chr7:15088127-15093275	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
30	esv3517614	chr7:15088527-15093225	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
31	esv3475716	chr7:15089106-15092313	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a
32	esv3517611	chr7:15089132-15092300	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a
33	esv3517616	chr7:15089147-15092293	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
34	esv3517610	chr7:15089150-15092233	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a
35	esv3475715	chr7:15089152-15092286	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
36	esv3475714	chr7:15089155-15092287	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a
37	esv3475717	chr7:15089167-15092273	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a
38	esv3517615	chr7:15089182-15092239	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a
39	esv3517613	chr7:15089182-15092240	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a
40	esv3517620	chr7:15089182-15092240	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a
41	esv3475713	chr7:15089225-15092193	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
42	esv3475718	chr7:15089239-15092192	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a
43	esv9819	chr7:15089246-15092130	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
44	esv2422171	chr7:15089278-15092133	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a
45	nsv441839	chr7:15089278-15092133	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a
46	nsv514406	chr7:15089620-15091427	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15084600-15093600	Weak transcription	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links