Variant report

Variant	rs10227504
Chromosome Location	chr7:149413558-149413559
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:6)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:6 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr7:149413514-149414247	SK-N-SH	brain:	n/a	chr7:149413646-149413659
2	RAD21	chr7:149413535-149413943	IMR90	lung:	n/a	n/a
3	RCOR1	chr7:149413248-149413676	K562	blood:	n/a	n/a
4	RAD21	chr7:149412747-149414154	SK-N-SH	brain:	n/a	chr7:149413209-149413218
5	JUND	chr7:149413281-149413700	K562	blood:	n/a	n/a
6	POLR2A	chr7:149413473-149413594	K562	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:149410803..149414471-chr7:149419495..149421257,3	K562	blood:
2	chr7:149413328..149416314-chr7:149417568..149419723,2	MCF-7	breast:
3	chr7:149320371..149323534-chr7:149411288..149414666,4	K562	blood:
4	chr7:149412250..149413800-chr7:149430206..149431828,2	MCF-7	breast:
5	chr7:149193456..149195657-chr7:149412683..149414195,2	MCF-7	breast:
6	chr7:149413288..149414042-chrX:117118716..117119636,2	MCF-7	breast:

No data

Variant related genes	Relation type
KRBA1	TF binding region
ENSG00000003096	Chromatin interaction
ENSG00000133624	Chromatin interaction
ENSG00000181220	Chromatin interaction
ENSG00000133619	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10231875	0.83[AFR][1000 genomes]
rs10240931	0.82[AFR][1000 genomes]
rs10247339	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10258658	0.84[AFR][1000 genomes]
rs10267965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10952836	0.99[EUR][1000 genomes]
rs28620634	0.86[ASN][1000 genomes]
rs28737284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56265968	0.83[AFR][1000 genomes]
rs57003278	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66544404	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67000176	0.99[EUR][1000 genomes]
rs6966081	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6974985	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs885651	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021849	chr7:149230929-149422239	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1034350	chr7:149264094-149666356	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv539190	chr7:149264094-149666356	Flanking Active TSS Genic enhancers Weak transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv1023901	chr7:149364044-149747442	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv539191	chr7:149364044-149747442	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
6	nsv469576	chr7:149379626-149563233	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
7	nsv1031581	chr7:149386249-149570178	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
8	nsv539192	chr7:149386249-149570178	Genic enhancers Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
9	nsv465199	chr7:149398065-149462621	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv608979	chr7:149398065-149462621	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:149412200-149413600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr7:149412200-149414200	Flanking Active TSS	Stomach Smooth Muscle	stomach
3	chr7:149412400-149413600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr7:149412400-149413600	Flanking Active TSS	Right Ventricle	heart
5	chr7:149412400-149414200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr7:149412400-149414200	Flanking Active TSS	NHEK	skin
7	chr7:149412600-149413600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:149412600-149413600	Flanking Active TSS	Fetal Heart	heart
9	chr7:149412600-149414400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
10	chr7:149412600-149414400	Enhancers	Placenta	Placenta
11	chr7:149412600-149414600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr7:149412600-149414600	Flanking Active TSS	HMEC	breast
13	chr7:149412800-149413600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr7:149412800-149413600	Enhancers	Placenta Amnion	Placenta Amnion
15	chr7:149412800-149413600	Enhancers	Spleen	Spleen
16	chr7:149412800-149413800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr7:149412800-149413800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr7:149412800-149413800	Flanking Active TSS	HepG2	liver
19	chr7:149412800-149415000	Enhancers	Psoas Muscle	Psoas
20	chr7:149412800-149416800	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr7:149412800-149417000	Weak transcription	Liver	Liver
22	chr7:149412800-149417400	Weak transcription	Fetal Intestine Large	intestine
23	chr7:149412800-149418000	Weak transcription	Aorta	Aorta
24	chr7:149412800-149418600	Weak transcription	Primary B cells from cord blood	blood
25	chr7:149412800-149421400	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr7:149412800-149438800	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr7:149413000-149413600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr7:149413000-149413600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr7:149413000-149413600	Enhancers	Primary T cells fromperipheralblood	blood
30	chr7:149413000-149413600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr7:149413000-149413600	Enhancers	Brain Hippocampus Middle	brain
32	chr7:149413000-149413600	Enhancers	Pancreas	Pancrea
33	chr7:149413000-149413800	Enhancers	Fetal Lung	lung
34	chr7:149413000-149413800	Enhancers	Fetal Stomach	stomach
35	chr7:149413000-149413800	Transcr. at gene 5' and 3'	K562	blood
36	chr7:149413000-149414000	Enhancers	Primary T killer memory cells from peripheral blood	blood
37	chr7:149413000-149414000	Weak transcription	Stomach Mucosa	stomach
38	chr7:149413000-149414800	Enhancers	Fetal Brain Male	brain
39	chr7:149413000-149415000	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr7:149413000-149415000	Enhancers	Esophagus	oesophagus
41	chr7:149413000-149415600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr7:149413000-149416000	Weak transcription	Primary T cells from cord blood	blood
43	chr7:149413000-149416000	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr7:149413000-149416000	Weak transcription	Fetal Intestine Small	intestine
45	chr7:149413000-149416000	Weak transcription	A549	lung
46	chr7:149413000-149416000	Weak transcription	NHLF	lung
47	chr7:149413000-149416200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr7:149413000-149416600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr7:149413000-149417200	Weak transcription	HSMMtube	muscle
50	chr7:149413000-149417400	Weak transcription	Thymus	Thymus

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