Variant report

Variant	rs10228149
Chromosome Location	chr7:116853360-116853361
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:116851355..116854029-chr7:116854766..116858147,3	K562	blood:
2	chr7:116852620..116855541-chr7:116858571..116861195,2	K562	blood:
3	chr7:116570148..116571132-chr7:116852812..116853758,4	K562	blood:
4	chr7:116847213..116849415-chr7:116853067..116855506,3	K562	blood:
5	7:116610596-116619447..7:116849860-116864942	H1-hESC	embryonic stem cell:	embryo
6	chr7:116846173..116849651-chr7:116851764..116855447,4	K562	blood:
7	chr7:116851892..116854644-chr7:116856765..116860823,3	MCF-7	breast:
8	chr7:116811007..116811834-chr7:116852794..116853748,2	MCF-7	breast:
9	chr7:116852733..116853994-chr7:117025641..117026568,8	MCF-7	breast:
10	chr7:116853244..116855947-chr7:117024451..117026371,2	MCF-7	breast:
11	chr7:116835045..116836833-chr7:116852463..116855168,2	K562	blood:
12	chr7:116852752..116853731-chr7:117025763..117026736,2	MCF-7	breast:
13	chr7:116852820..116853712-chr7:117015574..117016124,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000004866	Chromatin interaction
ENSG00000213050	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10231354	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10252503	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831108	chr7:116749534-116952011	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv5916	chr7:116825221-116870570	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116785200-116856600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:116798200-116866600	Weak transcription	HMEC	breast
3	chr7:116807600-116857800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr7:116808400-116871800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr7:116824200-116867200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr7:116825400-116859600	Weak transcription	Brain Anterior Caudate	brain
7	chr7:116827800-116859000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr7:116828800-116865400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr7:116830800-116859400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr7:116830800-116859600	Weak transcription	Gastric	stomach
11	chr7:116831000-116870800	Weak transcription	Colon Smooth Muscle	Colon
12	chr7:116831000-116870800	Weak transcription	Spleen	Spleen
13	chr7:116831200-116865200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr7:116831400-116858800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr7:116831400-116859000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr7:116831400-116860400	Weak transcription	HepG2	liver
17	chr7:116831400-116861200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr7:116834400-116868800	Weak transcription	HSMM	muscle
19	chr7:116835000-116871400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr7:116838800-116859600	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr7:116839000-116868800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr7:116840000-116855600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr7:116840000-116859000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr7:116840000-116871800	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr7:116840600-116859600	Weak transcription	Lung	lung
26	chr7:116840800-116860800	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr7:116840800-116861000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr7:116842800-116865200	Weak transcription	NHEK	skin
29	chr7:116843000-116855600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr7:116843000-116856600	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr7:116844000-116872600	Weak transcription	Right Ventricle	heart
32	chr7:116847800-116867000	Weak transcription	A549	lung
33	chr7:116849000-116859600	Weak transcription	Brain Angular Gyrus	brain
34	chr7:116849400-116872000	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr7:116850000-116855600	Strong transcription	GM12878-XiMat	blood
36	chr7:116850600-116856600	Weak transcription	Fetal Brain Male	brain
37	chr7:116850600-116857600	Weak transcription	Fetal Brain Female	brain
38	chr7:116850600-116859400	Weak transcription	Brain Substantia Nigra	brain
39	chr7:116850600-116859600	Weak transcription	Esophagus	oesophagus
40	chr7:116850600-116862200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr7:116850600-116863000	Weak transcription	Brain Hippocampus Middle	brain
42	chr7:116850800-116855600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr7:116850800-116858800	Weak transcription	Fetal Intestine Small	intestine
44	chr7:116850800-116859200	Weak transcription	Stomach Smooth Muscle	stomach
45	chr7:116850800-116859400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr7:116850800-116859400	Weak transcription	Aorta	Aorta
47	chr7:116850800-116859400	Weak transcription	Duodenum Mucosa	Duodenum
48	chr7:116850800-116860000	Weak transcription	Pancreas	Pancrea
49	chr7:116850800-116869200	Weak transcription	Psoas Muscle	Psoas
50	chr7:116851000-116855600	Weak transcription	Liver	Liver

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