Variant report

Variant	rs10228421
Chromosome Location	chr7:21868711-21868712
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10085864	1.00[YRI][hapmap]
rs10227479	1.00[YRI][hapmap]
rs10272875	1.00[YRI][hapmap]
rs10279884	0.85[YRI][hapmap]
rs13438602	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv830922	chr7:21793386-21964675	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv933320	chr7:21840543-21882825	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2761158	chr7:21863894-21877962	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21860400-21882200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:21868000-21870600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:21868200-21869000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr7:21868200-21869000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:21868200-21869800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr7:21868400-21868800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:21868400-21868800	Enhancers	Brain Cingulate Gyrus	brain
8	chr7:21868400-21869000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:21868400-21869000	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr7:21868400-21869000	Enhancers	Thymus	Thymus
11	chr7:21868400-21869200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr7:21868400-21869200	Enhancers	Primary T cells from cord blood	blood
13	chr7:21868600-21868800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr7:21868600-21869000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr7:21868600-21869000	Enhancers	Brain Anterior Caudate	brain
16	chr7:21868600-21869000	Enhancers	Fetal Thymus	thymus
17	chr7:21868600-21869600	Enhancers	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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