Variant report

Variant	rs10228853
Chromosome Location	chr7:112211410-112211411
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1014361	1.00[EUR][1000 genomes]
rs10230713	0.83[EUR][1000 genomes]
rs10256673	1.00[EUR][1000 genomes]
rs10259313	0.83[EUR][1000 genomes]
rs10267945	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10268554	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10277353	0.83[EUR][1000 genomes]
rs10280084	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56847460	0.83[EUR][1000 genomes]
rs57580643	0.83[EUR][1000 genomes]
rs59696596	0.83[EUR][1000 genomes]
rs73430795	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	nsv889055	chr7:112174089-112353440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112207200-112211600	Weak transcription	Duodenum Mucosa	Duodenum
2	chr7:112207400-112212000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr7:112207400-112213200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr7:112207400-112216400	Weak transcription	Psoas Muscle	Psoas
5	chr7:112207800-112211800	Weak transcription	Fetal Heart	heart
6	chr7:112207800-112212200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr7:112207800-112212400	Weak transcription	Brain Germinal Matrix	brain
8	chr7:112209600-112212000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr7:112209800-112213800	Weak transcription	Colonic Mucosa	Colon
10	chr7:112210200-112211600	Weak transcription	Stomach Mucosa	stomach
11	chr7:112211000-112211800	Enhancers	Rectal Mucosa Donor 29	rectum
12	chr7:112211200-112214600	Enhancers	Fetal Intestine Small	intestine
13	chr7:112211200-112215200	Enhancers	Fetal Intestine Large	intestine
14	chr7:112211400-112212000	Enhancers	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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