Variant report

Variant	rs10228869
Chromosome Location	chr7:7891631-7891632
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:7890228..7892788-chr7:7895329..7898203,2	K562	blood:
2	chr7:7882166..7884343-chr7:7890925..7892861,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10229133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10239371	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10243090	1.00[ASN][1000 genomes]
rs10244011	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10260017	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10268550	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10270460	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10270850	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11984127	1.00[ASN][1000 genomes]
rs12530790	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13241138	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17138582	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17138583	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34915489	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4371915	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4469370	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56149970	0.86[EUR][1000 genomes]
rs6463730	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6463731	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6463732	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6463739	0.81[EUR][1000 genomes]
rs66494541	0.92[ASN][1000 genomes]
rs6972172	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6974910	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6976317	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7784105	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7795244	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7804263	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026758	chr7:7187491-8075259	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv1032670	chr7:7535515-8017077	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv887478	chr7:7670718-7917360	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	nsv887480	chr7:7681131-7917360	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv887485	chr7:7692483-7917360	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	esv2752177	chr7:7729247-8177689	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv1026564	chr7:7734846-7897847	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv887489	chr7:7770203-7913311	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv1027770	chr7:7797431-7957507	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
10	nsv538722	chr7:7797431-7957507	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
11	nsv887490	chr7:7801684-7908970	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
12	nsv523479	chr7:7821594-7909899	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
13	nsv917172	chr7:7854632-8807385	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
14	nsv1030180	chr7:7860424-8059221	Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
15	nsv1027123	chr7:7870047-7926288	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:7870000-7900400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:7884800-7894000	Weak transcription	Thymus	Thymus
3	chr7:7885000-7892000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:7888200-7894200	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr7:7888400-7892000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr7:7888800-7894000	Weak transcription	Primary T cells from cord blood	blood
7	chr7:7889000-7894400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr7:7889200-7894400	Weak transcription	Hela-S3	cervix
9	chr7:7889400-7892000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr7:7890800-7892000	Enhancers	Dnd41	blood
11	chr7:7891000-7892400	Enhancers	Placenta	Placenta
12	chr7:7891000-7892600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr7:7891200-7892000	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr7:7891400-7892400	Weak transcription	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links