Variant report

Variant	rs10229722
Chromosome Location	chr7:107391898-107391899
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:107383945..107386495-chr7:107390567..107393631,5	MCF-7	breast:
2	chr7:107391323..107394243-chr7:107504398..107506659,2	K562	blood:
3	chr7:107386738..107389505-chr7:107390693..107392966,2	MCF-7	breast:
4	chr7:107365776..107368259-chr7:107389419..107392221,2	K562	blood:
5	chr7:107388274..107393825-chr7:107397166..107402694,7	MCF-7	breast:
6	chr7:107390109..107393070-chr7:107395947..107398645,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000241764	Chromatin interaction
ENSG00000105879	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10281114	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1025008	chr7:107333739-107534235	Enhancers Active TSS Strong transcription Genic enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107385400-107398600	Weak transcription	Esophagus	oesophagus
2	chr7:107385400-107400600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:107386000-107397200	Weak transcription	Right Ventricle	heart
4	chr7:107386000-107398800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:107386200-107393200	Weak transcription	Right Atrium	heart
6	chr7:107386200-107401000	Weak transcription	Stomach Mucosa	stomach
7	chr7:107386400-107392800	Weak transcription	Fetal Kidney	kidney
8	chr7:107386400-107395200	Weak transcription	Psoas Muscle	Psoas
9	chr7:107386400-107398000	Weak transcription	Fetal Heart	heart
10	chr7:107386400-107398600	Weak transcription	Aorta	Aorta
11	chr7:107386400-107398600	Weak transcription	Gastric	stomach
12	chr7:107386400-107398600	Weak transcription	Pancreas	Pancrea
13	chr7:107386400-107398800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr7:107386600-107395200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr7:107386600-107395400	Weak transcription	Brain Hippocampus Middle	brain
16	chr7:107386600-107396000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr7:107386600-107397400	Weak transcription	Rectal Smooth Muscle	rectum
18	chr7:107386600-107398400	Weak transcription	HSMMtube	muscle
19	chr7:107386600-107398600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr7:107386600-107398600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr7:107386600-107398600	Weak transcription	Spleen	Spleen
22	chr7:107386600-107398800	Weak transcription	Fetal Brain Male	brain
23	chr7:107387600-107401000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr7:107387600-107402400	Strong transcription	HSMM	muscle
25	chr7:107387800-107395000	Weak transcription	Brain Angular Gyrus	brain
26	chr7:107387800-107401000	Strong transcription	K562	blood
27	chr7:107387800-107401600	Strong transcription	Primary hematopoietic stem cells	blood
28	chr7:107388000-107395200	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr7:107388000-107402000	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr7:107388200-107401000	Strong transcription	HUES6 Cell Line	embryonic stem cell
31	chr7:107388600-107393000	Weak transcription	Colon Smooth Muscle	Colon
32	chr7:107388600-107393200	Strong transcription	GM12878-XiMat	blood
33	chr7:107388600-107399000	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr7:107388600-107401000	Strong transcription	Hela-S3	cervix
35	chr7:107388600-107401800	Strong transcription	HUES64 Cell Line	embryonic stem cell
36	chr7:107388800-107401400	Strong transcription	Primary monocytes fromperipheralblood	blood
37	chr7:107388800-107401600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
38	chr7:107388800-107401600	Strong transcription	Primary B cells from peripheral blood	blood
39	chr7:107388800-107402800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr7:107389000-107401200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr7:107389200-107392000	Strong transcription	Sigmoid Colon	Sigmoid Colon
42	chr7:107389200-107392200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr7:107389200-107393800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr7:107389200-107394000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr7:107389200-107394200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr7:107389200-107399800	Strong transcription	HepG2	liver
47	chr7:107389200-107401000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr7:107389200-107401400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr7:107389200-107401400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr7:107389200-107401400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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