Variant report

Variant	rs10229881
Chromosome Location	chr7:3072247-3072248
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs41417149	1.00[EUR][1000 genomes]
rs73282962	1.00[AMR][1000 genomes]
rs73670737	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022938	chr7:2899514-3131881	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv605873	chr7:2920067-3204177	Bivalent Enhancer Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1026476	chr7:2965034-3311344	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv538656	chr7:2965034-3311344	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv464260	chr7:2966138-3315572	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv605874	chr7:2966138-3315572	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv1018287	chr7:2967524-3298539	Genic enhancers Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv538657	chr7:2967524-3298539	Bivalent/Poised TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3065000-3073200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:3067000-3073200	Weak transcription	Spleen	Spleen
3	chr7:3067200-3076600	Weak transcription	GM12878-XiMat	blood
4	chr7:3068000-3072800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr7:3068000-3073200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr7:3068000-3076600	Weak transcription	Primary B cells from cord blood	blood
7	chr7:3068000-3082400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr7:3068600-3078200	Weak transcription	Brain Germinal Matrix	brain
9	chr7:3068600-3081600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr7:3068800-3072400	Weak transcription	Fetal Thymus	thymus
11	chr7:3068800-3081800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr7:3068800-3082000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr7:3068800-3082000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr7:3069000-3072400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr7:3069000-3073000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr7:3069000-3073200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr7:3069000-3074400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr7:3069000-3074600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr7:3069000-3076000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr7:3069600-3075400	Strong transcription	Primary B cells from peripheral blood	blood
21	chr7:3069800-3072400	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr7:3070200-3074600	Strong transcription	Primary T cells from cord blood	blood
23	chr7:3070400-3076800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr7:3071000-3072600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr7:3071000-3072600	Strong transcription	Primary T helper cells PMA-I stimulated	--
26	chr7:3071000-3073000	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr7:3071000-3073200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr7:3071000-3074600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr7:3071000-3074600	Strong transcription	Thymus	Thymus
30	chr7:3071200-3074400	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
31	chr7:3071200-3074800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
32	chr7:3071400-3076000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr7:3071600-3074800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr7:3071800-3072400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr7:3072000-3072400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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