Variant report

Variant	rs10230222
Chromosome Location	chr7:150925548-150925549
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:33)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:33 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BACH1	chr7:150925383-150925916	K562	blood:	n/a	n/a
2	FOXA1	chr7:150925295-150925900	HepG2	liver:	n/a	n/a
3	FOXA1	chr7:150925156-150925833	HepG2	liver:	n/a	n/a
4	FOXA2	chr7:150925287-150925910	A549	lung:	n/a	n/a
5	TAL1	chr7:150925322-150925713	K562	blood:	n/a	n/a
6	ZC3H11A	chr7:150925262-150925604	K562	blood:	n/a	n/a
7	MAFK	chr7:150925269-150925655	K562	blood:	n/a	n/a
8	STAT5A	chr7:150925196-150925725	K562	blood:	n/a	n/a
9	RCOR1	chr7:150925409-150925758	K562	blood:	n/a	n/a
10	MAFF	chr7:150925392-150925705	K562	blood:	n/a	n/a
11	FOXA1	chr7:150925456-150925700	T-47D	breast:	n/a	n/a
12	SREBP1	chr7:150923672-150925852	GM12878	blood:	n/a	n/a
13	POLR2A	chr7:150923631-150925622	SK-N-MC	brain:	n/a	n/a
14	FOXA2	chr7:150925375-150925700	HepG2	liver:	n/a	n/a
15	FOXA1	chr7:150925309-150925891	HepG2	liver:	n/a	n/a
16	CBX3	chr7:150925259-150925946	K562	blood:	n/a	n/a
17	POLR2A	chr7:150925463-150925568	HUVEC	blood vessel:	n/a	n/a
18	BHLHE40	chr7:150925332-150925701	K562	blood:	n/a	n/a
19	FOXA2	chr7:150925438-150925743	A549	lung:	n/a	n/a
20	IRF1	chr7:150924100-150925550	K562	blood:	n/a	chr7:150924319-150924328 chr7:150924484-150924498
21	MAX	chr7:150925150-150925770	K562	blood:	n/a	n/a
22	TBL1XR1	chr7:150925402-150925734	K562	blood:	n/a	n/a
23	EP300	chr7:150925348-150925733	K562	blood:	n/a	n/a
24	TEAD4	chr7:150925049-150925778	K562	blood:	n/a	n/a
25	MAX	chr7:150925484-150925611	K562	blood:	n/a	n/a
26	TBP	chr7:150925345-150925659	K562	blood:	n/a	n/a
27	FOXA1	chr7:150925409-150925739	T-47D	breast:	n/a	n/a
28	JUND	chr7:150925416-150925699	K562	blood:	n/a	n/a
29	UBTF	chr7:150925457-150925708	K562	blood:	n/a	n/a
30	HDAC2	chr7:150925436-150925630	K562	blood:	n/a	n/a
31	MYC	chr7:150925433-150925591	K562	blood:	n/a	n/a
32	MYC	chr7:150925415-150925680	K562	blood:	n/a	n/a
33	FOXA1	chr7:150925420-150925829	HepG2	liver:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:150725439..150727092-chr7:150922758..150925738,2	K562	blood:
2	chr7:150891632..150894421-chr7:150925445..150927077,2	MCF-7	breast:
3	chr7:150100452..150102413-chr7:150924282..150926650,2	K562	blood:
4	chr7:150755192..150758087-chr7:150922401..150925767,3	K562	blood:
5	chr7:150923377..150925570-chr7:151215684..151217252,2	K562	blood:
6	chr7:150923836..150926071-chr7:150936441..150939158,3	MCF-7	breast:
7	chr7:150922541..150925891-chr7:150969834..150974111,4	K562	blood:
8	chr7:150891570..150894014-chr7:150923322..150926505,4	K562	blood:
9	chr7:150923495..150927436-chr7:150940006..150942925,4	MCF-7	breast:

No data

Variant related genes	Relation type
CHPF2	TF binding region
ABCF2	TF binding region
ENSG00000082014	Chromatin interaction
ENSG00000164885	Chromatin interaction
ENSG00000183016	Chromatin interaction
ENSG00000164889	Chromatin interaction
ENSG00000272661	Chromatin interaction
ENSG00000196456	Chromatin interaction
ENSG00000106615	Chromatin interaction
ENSG00000243433	Chromatin interaction
ENSG00000197150	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10249402	1.00[AFR][1000 genomes]
rs28774985	1.00[AFR][1000 genomes]
rs61730149	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1821419	chr7:150593315-150974269	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	128 gene(s)	inside rSNPs	diseases
2	nsv889476	chr7:150729212-150951819	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	120 gene(s)	inside rSNPs	diseases
3	nsv609035	chr7:150896223-150955765	Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv889487	chr7:150922952-150988172	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
5	nsv435860	chr7:150923672-150930735	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150924800-150925600	Flanking Active TSS	Hela-S3	cervix
2	chr7:150924800-150925600	Flanking Active TSS	K562	blood
3	chr7:150924800-150925600	Flanking Active TSS	Osteobl	bone
4	chr7:150924800-150928800	Weak transcription	Spleen	Spleen
5	chr7:150925000-150925600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:150925000-150925600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:150925000-150925600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
8	chr7:150925000-150925600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:150925000-150925600	Flanking Active TSS	Colon Smooth Muscle	Colon
10	chr7:150925000-150925600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
11	chr7:150925000-150925600	Flanking Active TSS	Dnd41	blood
12	chr7:150925000-150925600	Flanking Active TSS	NHDF-Ad	bronchial
13	chr7:150925000-150925800	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr7:150925000-150926000	Enhancers	Stomach Mucosa	stomach
15	chr7:150925000-150929200	Weak transcription	Gastric	stomach
16	chr7:150925200-150925600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr7:150925200-150925600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
18	chr7:150925200-150925600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
19	chr7:150925200-150925600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
20	chr7:150925200-150925600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr7:150925200-150925600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr7:150925200-150925600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr7:150925200-150925600	Enhancers	Adipose Nuclei	Adipose
24	chr7:150925200-150925600	Enhancers	Brain Cingulate Gyrus	brain
25	chr7:150925200-150925600	Enhancers	Fetal Lung	lung
26	chr7:150925200-150925600	Enhancers	Fetal Stomach	stomach
27	chr7:150925200-150925600	Enhancers	Fetal Thymus	thymus
28	chr7:150925200-150925800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr7:150925200-150928600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr7:150925200-150928800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr7:150925200-150928800	Weak transcription	Esophagus	oesophagus
32	chr7:150925200-150929000	Weak transcription	Right Atrium	heart
33	chr7:150925400-150925600	Enhancers	H1 Cell Line	embryonic stem cell
34	chr7:150925400-150925600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr7:150925400-150925600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr7:150925400-150925600	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr7:150925400-150925600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr7:150925400-150925600	Enhancers	Primary hematopoietic stem cells short term culture	blood
39	chr7:150925400-150925600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
40	chr7:150925400-150925600	Enhancers	Primary T helper cells PMA-I stimulated	--
41	chr7:150925400-150925600	Enhancers	Primary T helper cells fromperipheralblood	blood
42	chr7:150925400-150925600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr7:150925400-150925600	Active TSS	Muscle Satellite Cultured Cells	--
44	chr7:150925400-150925600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr7:150925400-150925600	Enhancers	Liver	Liver
46	chr7:150925400-150925600	Enhancers	Brain Angular Gyrus	brain
47	chr7:150925400-150925600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
48	chr7:150925400-150925600	Enhancers	Duodenum Smooth Muscle	Duodenum
49	chr7:150925400-150925600	Enhancers	Fetal Kidney	kidney
50	chr7:150925400-150925600	Enhancers	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links