Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10241014	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1024727	0.91[EUR][1000 genomes]
rs10248415	0.92[EUR][1000 genomes]
rs10262607	0.89[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs11761249	0.96[EUR][1000 genomes]
rs12532874	0.96[EUR][1000 genomes]
rs12537929	0.96[EUR][1000 genomes]
rs12539026	0.96[EUR][1000 genomes]
rs13222046	0.95[EUR][1000 genomes]
rs13438320	0.89[EUR][1000 genomes]
rs17143826	0.87[ASN][1000 genomes]
rs17143829	0.90[ASN][1000 genomes]
rs17143831	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17143840	0.98[ASN][1000 genomes]
rs17678624	0.96[EUR][1000 genomes]
rs1990465	0.96[EUR][1000 genomes]
rs1990466	0.95[EUR][1000 genomes]
rs56111049	0.96[EUR][1000 genomes]
rs56735308	0.94[ASN][1000 genomes]
rs61642822	0.91[ASN][1000 genomes]
rs6955142	0.95[EUR][1000 genomes]
rs7789102	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9886061	0.99[EUR][1000 genomes]
rs9886119	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830920	chr7:21014535-21201580	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv3478244	chr7:21044211-21417347	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3478245	chr7:21044211-21417347	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1020852	chr7:21060791-21375050	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv538799	chr7:21060791-21375050	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21107200-21115200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:21111000-21120600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:21111400-21115200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:21111800-21115400	Weak transcription	Fetal Kidney	kidney
5	chr7:21111800-21115800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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