Variant report

Variant	rs10230399
Chromosome Location	chr7:11010094-11010095
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:11005901..11008185-chr7:11010044..11012149,2	K562	blood:
2	chr7:11006402..11010250-chr7:11012259..11015737,5	K562	blood:
3	chr7:10996449..11000162-chr7:11009366..11013332,3	K562	blood:
4	chr7:10975906..10982429-chr7:11007978..11018673,26	K562	blood:

Variant related genes	Relation type
ENSG00000271185	Chromatin interaction
ENSG00000106443	Chromatin interaction
ENSG00000189043	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10085765	0.89[AFR][1000 genomes]
rs10226402	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10231887	0.81[AFR][1000 genomes]
rs10231890	0.81[AFR][1000 genomes]
rs10233382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10235587	1.00[AMR][1000 genomes]
rs10237004	0.81[AFR][1000 genomes]
rs10242027	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10242037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10247314	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10248811	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10252209	1.00[AMR][1000 genomes]
rs10257302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10259691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10261168	0.92[AFR][1000 genomes]
rs10261866	0.81[AFR][1000 genomes]
rs10262117	0.89[AFR][1000 genomes]
rs10263081	1.00[AMR][1000 genomes]
rs10269659	0.81[AFR][1000 genomes]
rs10269929	0.81[AFR][1000 genomes]
rs10276348	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10276786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10277767	0.81[AFR][1000 genomes]
rs10277787	0.81[AFR][1000 genomes]
rs10280227	1.00[AMR][1000 genomes]
rs10281259	0.81[AFR][1000 genomes]
rs10281970	0.89[AFR][1000 genomes]
rs13438244	0.83[AFR][1000 genomes]
rs28391022	0.81[AFR][1000 genomes]
rs28403972	1.00[AMR][1000 genomes]
rs28444275	1.00[AMR][1000 genomes]
rs28454278	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28492913	1.00[AMR][1000 genomes]
rs28502238	0.81[AFR][1000 genomes]
rs28510200	1.00[AMR][1000 genomes]
rs28630530	1.00[AFR][1000 genomes]
rs28817695	0.81[AFR][1000 genomes]
rs4385368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6968254	1.00[AMR][1000 genomes]
rs6970176	0.81[AFR][1000 genomes]
rs6970358	0.81[AFR][1000 genomes]
rs6977308	0.81[AFR][1000 genomes]
rs6977614	0.81[AFR][1000 genomes]
rs73286507	1.00[AMR][1000 genomes]
rs73286514	1.00[AMR][1000 genomes]
rs73286519	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067780	chr7:10649696-11329787	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv491695	chr7:10649696-11329787	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1019888	chr7:10712858-11496785	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1029836	chr7:10713523-11492751	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv538730	chr7:10713523-11492751	Weak transcription Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv532092	chr7:10731350-11414759	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
7	nsv887600	chr7:10807685-11090546	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
8	nsv1024171	chr7:10810444-11559156	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
9	nsv949387	chr7:10815994-11281536	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
10	esv2752140	chr7:10817060-11029748	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
11	nsv1029882	chr7:10872162-11371145	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
12	nsv817291	chr7:10875417-11562683	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
13	nsv1031498	chr7:10882696-11110412	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
14	nsv887601	chr7:10912949-11049523	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
15	esv3447442	chr7:10985761-11013298	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:11005400-11012400	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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