Variant report

Variant	rs10230882
Chromosome Location	chr7:147929290-147929291
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4725770	0.81[CEU][hapmap];0.82[CHB][hapmap];0.82[CHD][hapmap]
rs6464861	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428189	chr7:147885525-148051226	Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10230882	GIMAP4	cis	cerebellum	SCAN
rs10230882	ZNF212	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147923600-147929400	Enhancers	Fetal Brain Male	brain
2	chr7:147925000-147931800	Weak transcription	Fetal Brain Female	brain
3	chr7:147927200-147932600	Enhancers	Fetal Heart	heart
4	chr7:147927800-147930800	Weak transcription	Brain Hippocampus Middle	brain
5	chr7:147929200-147930600	Enhancers	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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