Variant report

Variant	rs10231359
Chromosome Location	chr7:122084835-122084836
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10227160	1.00[ASW][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs10245489	0.81[AFR][1000 genomes]
rs10255017	1.00[AMR][1000 genomes]
rs11977727	1.00[MEX][hapmap]
rs6970071	1.00[AMR][1000 genomes]
rs7785830	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7788631	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122022400-122095000	Weak transcription	Gastric	stomach
2	chr7:122047000-122155400	Weak transcription	Left Ventricle	heart
3	chr7:122056200-122122200	Weak transcription	Liver	Liver
4	chr7:122061200-122095200	Weak transcription	Aorta	Aorta
5	chr7:122078600-122091000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr7:122080400-122090600	Weak transcription	Pancreas	Pancrea
7	chr7:122082600-122086600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr7:122082600-122090600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:122084000-122085400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
10	chr7:122084000-122085400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
11	chr7:122084000-122085800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
12	chr7:122084600-122095600	Weak transcription	Fetal Lung	lung
13	chr7:122084800-122118600	Weak transcription	Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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