Variant report

Variant	rs10231392
Chromosome Location	chr7:26198725-26198726
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:26190370..26193400-chr7:26195972..26200613,6	MCF-7	breast:
2	chr7:26187891..26202612-chr7:26221953..26234536,42	K562	blood:
3	chr7:26194381..26200740-chr7:26239082..26242871,5	K562	blood:
4	chr7:26189963..26195377-chr7:26195444..26205125,17	K562	blood:
5	chr7:26187762..26202698-chr7:26218693..26233402,42	K562	blood:
6	chr7:26196259..26200156-chr7:26237694..26241726,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000122565	Chromatin interaction
ENSG00000122566	Chromatin interaction
ENSG00000050344	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10225063	1.00[EUR][1000 genomes]
rs10240181	1.00[EUR][1000 genomes]
rs28519579	1.00[EUR][1000 genomes]
rs34317198	1.00[EUR][1000 genomes]
rs6461921	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6960397	1.00[EUR][1000 genomes]
rs6968551	1.00[EUR][1000 genomes]
rs6978393	1.00[EUR][1000 genomes]
rs7777003	1.00[EUR][1000 genomes]
rs7799300	1.00[EUR][1000 genomes]
rs7810549	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606432	chr7:25988185-26223294	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	102 gene(s)	inside rSNPs	diseases
2	nsv1019804	chr7:26057723-26214280	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv887849	chr7:26075094-26234302	Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv1021308	chr7:26116605-26419720	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
5	nsv1034358	chr7:26142380-26219559	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1018971	chr7:26161228-26380361	Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26193400-26199400	Enhancers	Sigmoid Colon	Sigmoid Colon
2	chr7:26193400-26200200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:26193600-26199800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr7:26194000-26200400	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr7:26194200-26200200	Enhancers	Fetal Thymus	thymus
6	chr7:26194600-26200000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr7:26195800-26198800	Enhancers	Placenta	Placenta
8	chr7:26195800-26199000	Weak transcription	Esophagus	oesophagus
9	chr7:26195800-26200800	Enhancers	H1 Cell Line	embryonic stem cell
10	chr7:26195800-26201000	Weak transcription	Psoas Muscle	Psoas
11	chr7:26196000-26200800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr7:26196000-26200800	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr7:26196000-26201400	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr7:26196200-26200400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr7:26196400-26199200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr7:26196400-26200400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr7:26196400-26205800	Weak transcription	Gastric	stomach
18	chr7:26196600-26199000	Weak transcription	Stomach Mucosa	stomach
19	chr7:26196600-26199200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr7:26196600-26199200	Enhancers	HMEC	breast
21	chr7:26196600-26199400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr7:26196600-26199400	Enhancers	Primary T cells fromperipheralblood	blood
23	chr7:26196600-26199400	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr7:26196600-26199400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
25	chr7:26196600-26199400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr7:26196600-26199600	Enhancers	HUVEC	blood vessel
27	chr7:26196600-26200600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr7:26196600-26222000	Weak transcription	Left Ventricle	heart
29	chr7:26196800-26200000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr7:26196800-26206400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr7:26197000-26199000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr7:26197000-26200000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr7:26197000-26201000	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr7:26197200-26200200	Enhancers	HepG2	liver
35	chr7:26197400-26198800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr7:26197400-26198800	Weak transcription	NHEK	skin
37	chr7:26197400-26199400	Enhancers	Duodenum Mucosa	Duodenum
38	chr7:26197400-26210000	Weak transcription	A549	lung
39	chr7:26197600-26206400	Weak transcription	Primary T cells from cord blood	blood
40	chr7:26197800-26199200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr7:26198000-26198800	Enhancers	Colonic Mucosa	Colon
42	chr7:26198000-26199800	Enhancers	Fetal Intestine Large	intestine
43	chr7:26198000-26199800	Enhancers	Fetal Intestine Small	intestine
44	chr7:26198000-26200800	Enhancers	HUES6 Cell Line	embryonic stem cell
45	chr7:26198200-26198800	Enhancers	Spleen	Spleen
46	chr7:26198200-26199000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
47	chr7:26198200-26199200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr7:26198200-26199200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
49	chr7:26198200-26199400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr7:26198200-26199400	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links