Variant report

Variant	rs10232028
Chromosome Location	chr7:121024900-121024901
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:121024160..121027872-chr7:121035173..121037761,6	MCF-7	breast:
2	chr7:121024298..121027882-chr7:121032352..121035031,6	MCF-7	breast:
3	chr7:121014908..121018484-chr7:121022201..121025462,5	MCF-7	breast:
4	chr7:121023385..121024908-chr7:121069353..121072128,2	K562	blood:

Variant related genes	Relation type
ENSG00000196937	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10225647	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10237944	1.00[AMR][1000 genomes]
rs10248910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10270194	1.00[AMR][1000 genomes]
rs10274424	1.00[AMR][1000 genomes]
rs12111905	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12535821	1.00[AMR][1000 genomes]
rs13438018	1.00[AMR][1000 genomes]
rs17143353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17143357	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28635533	1.00[AMR][1000 genomes]
rs2896303	1.00[AMR][1000 genomes]
rs56835233	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57412322	1.00[AMR][1000 genomes]
rs59723881	1.00[AMR][1000 genomes]
rs6943177	1.00[AMR][1000 genomes]
rs6944198	1.00[AMR][1000 genomes]
rs6944409	1.00[AMR][1000 genomes]
rs6960006	1.00[AMR][1000 genomes]
rs6975632	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025430	chr7:120638930-121179289	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1034353	chr7:120818382-121040576	Enhancers Bivalent Enhancer Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1026322	chr7:120841937-121188037	Weak transcription Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv539102	chr7:120841937-121188037	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	esv2755350	chr7:120848049-121119049	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv1032054	chr7:120926379-121432971	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
7	nsv539103	chr7:120926379-121432971	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120970600-121025400	Weak transcription	Spleen	Spleen
2	chr7:120979800-121034800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr7:120984200-121035000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr7:120986200-121029600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:120986400-121026000	Weak transcription	Colonic Mucosa	Colon
6	chr7:120986400-121026000	Weak transcription	Psoas Muscle	Psoas
7	chr7:120993000-121025600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr7:120995600-121026200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr7:121000800-121029600	Weak transcription	Brain Angular Gyrus	brain
10	chr7:121001000-121026000	Weak transcription	Aorta	Aorta
11	chr7:121002200-121025400	Weak transcription	Right Ventricle	heart
12	chr7:121002400-121025800	Weak transcription	Brain Hippocampus Middle	brain
13	chr7:121005000-121030600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr7:121005200-121035000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr7:121008600-121025400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr7:121009800-121025400	Weak transcription	Right Atrium	heart
17	chr7:121010200-121034600	Weak transcription	Fetal Brain Male	brain
18	chr7:121010400-121025400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr7:121015800-121025600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr7:121016000-121035400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr7:121016200-121025000	Weak transcription	Brain Anterior Caudate	brain
22	chr7:121016200-121035000	Weak transcription	Fetal Stomach	stomach
23	chr7:121016200-121035600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr7:121016400-121026000	Weak transcription	NHLF	lung
25	chr7:121017200-121026000	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr7:121017600-121032400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr7:121018000-121025600	Weak transcription	Fetal Kidney	kidney
28	chr7:121018000-121025800	Weak transcription	Brain Cingulate Gyrus	brain
29	chr7:121018000-121025800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr7:121018000-121035400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr7:121018400-121031600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr7:121018600-121025000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr7:121018600-121025400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr7:121018600-121025600	Weak transcription	Adipose Nuclei	Adipose
35	chr7:121018600-121025800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr7:121018600-121032400	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr7:121018600-121032400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr7:121018600-121034600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr7:121018600-121034800	Weak transcription	Fetal Brain Female	brain
40	chr7:121018600-121034800	Weak transcription	Stomach Smooth Muscle	stomach
41	chr7:121018600-121035600	Weak transcription	Gastric	stomach
42	chr7:121018800-121025400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr7:121018800-121028600	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr7:121018800-121034400	Weak transcription	Liver	Liver
45	chr7:121018800-121035400	Weak transcription	Placenta	Placenta
46	chr7:121019600-121025800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr7:121019800-121025400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr7:121019800-121025400	Weak transcription	Fetal Muscle Leg	muscle
49	chr7:121019800-121025400	Weak transcription	HSMMtube	muscle
50	chr7:121019800-121025600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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