Variant report

Variant	rs10232201
Chromosome Location	chr7:11383755-11383756
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:11251355..11252341-chr7:11383095..11384072,2	K562	blood:
2	chr7:11193091..11193870-chr7:11383205..11383845,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10262369	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17544756	0.81[ASN][1000 genomes]
rs17544875	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs28589460	0.80[ASN][1000 genomes]
rs34562461	0.81[ASN][1000 genomes]
rs56028559	0.81[ASN][1000 genomes]
rs6953611	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73055068	0.82[AFR][1000 genomes]
rs763501	1.00[CHB][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019888	chr7:10712858-11496785	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1029836	chr7:10713523-11492751	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv538730	chr7:10713523-11492751	Weak transcription Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv532092	chr7:10731350-11414759	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv1024171	chr7:10810444-11559156	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
6	nsv817291	chr7:10875417-11562683	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
7	nsv523279	chr7:11198193-11473561	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv518180	chr7:11198193-11475819	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv1015837	chr7:11208733-11475112	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv538732	chr7:11208733-11475112	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv1028326	chr7:11221209-11754436	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv538733	chr7:11221209-11754436	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv830902	chr7:11336527-11523904	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	esv2762650	chr7:11356006-11387485	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv1025802	chr7:11371145-11438472	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:11381200-11385400	Weak transcription	Duodenum Mucosa	Duodenum
2	chr7:11382600-11383800	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr7:11382600-11383800	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr7:11382600-11384000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr7:11382800-11384000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:11383000-11383800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr7:11383200-11383800	Enhancers	Fetal Lung	lung
8	chr7:11383200-11384000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr7:11383200-11384000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr7:11383200-11384000	Enhancers	Liver	Liver
11	chr7:11383200-11384000	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr7:11383400-11383800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr7:11383400-11383800	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr7:11383400-11383800	Enhancers	Adipose Nuclei	Adipose
15	chr7:11383400-11383800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr7:11383400-11383800	Enhancers	Fetal Intestine Large	intestine
17	chr7:11383400-11384000	Enhancers	NH-A	brain
18	chr7:11383400-11384200	Enhancers	HSMM	muscle
19	chr7:11383400-11386200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr7:11383600-11383800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr7:11383600-11383800	Active TSS	Muscle Satellite Cultured Cells	--
22	chr7:11383600-11383800	Flanking Active TSS	Brain Anterior Caudate	brain
23	chr7:11383600-11383800	Active TSS	Brain Hippocampus Middle	brain
24	chr7:11383600-11383800	Enhancers	Fetal Intestine Small	intestine
25	chr7:11383600-11384000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr7:11383600-11384000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr7:11383600-11384000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr7:11383600-11384000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr7:11383600-11384000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr7:11383600-11384000	Active TSS	Brain Angular Gyrus	brain
31	chr7:11383600-11384000	Active TSS	Duodenum Smooth Muscle	Duodenum
32	chr7:11383600-11384000	Active TSS	Osteobl	bone

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