Variant report

Variant	rs10233173
Chromosome Location	chr7:140464479-140464480
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10225852	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10227524	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10227617	1.00[AMR][1000 genomes]
rs10229313	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10233557	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10236260	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10236694	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10247601	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10247753	1.00[AMR][1000 genomes]
rs10251357	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10252634	0.81[AFR][1000 genomes]
rs10254605	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10255257	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10280112	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10280479	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10441168	1.00[AMR][1000 genomes]
rs11979399	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11979913	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11984018	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28446531	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28456012	1.00[AMR][1000 genomes]
rs28481617	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28505512	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28541336	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28612236	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28627200	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28718470	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71645987	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351231	chr7:140390303-140588539	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv831158	chr7:140392222-140602315	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv869260	chr7:140404835-140542905	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv1033652	chr7:140454068-140469620	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	esv3385935	chr7:140462621-140464904	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140398000-140466600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:140398200-140473800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr7:140398200-140492600	Weak transcription	Colonic Mucosa	Colon
4	chr7:140398600-140491800	Weak transcription	Fetal Brain Male	brain
5	chr7:140399400-140468200	Weak transcription	Right Ventricle	heart
6	chr7:140400000-140474000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr7:140404800-140489000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr7:140404800-140517000	Weak transcription	Psoas Muscle	Psoas
9	chr7:140405200-140470800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr7:140405600-140472200	Weak transcription	Brain Substantia Nigra	brain
11	chr7:140406600-140472800	Weak transcription	Hela-S3	cervix
12	chr7:140407000-140466800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr7:140407200-140468400	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr7:140415000-140504400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr7:140415200-140466400	Weak transcription	Aorta	Aorta
16	chr7:140415200-140472000	Weak transcription	Lung	lung
17	chr7:140415200-140506600	Weak transcription	Gastric	stomach
18	chr7:140421800-140474000	Weak transcription	Brain Angular Gyrus	brain
19	chr7:140424200-140468200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr7:140424400-140476600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr7:140425400-140468400	Weak transcription	Colon Smooth Muscle	Colon
22	chr7:140426200-140467200	Weak transcription	Brain Hippocampus Middle	brain
23	chr7:140426200-140473000	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr7:140428200-140489400	Weak transcription	Small Intestine	intestine
25	chr7:140428600-140476600	Weak transcription	NHDF-Ad	bronchial
26	chr7:140431200-140474200	Weak transcription	Esophagus	oesophagus
27	chr7:140436800-140468200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr7:140438200-140466800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr7:140438400-140482400	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr7:140439600-140474800	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr7:140440000-140468400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr7:140440000-140469600	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr7:140440000-140472000	Weak transcription	Brain Anterior Caudate	brain
34	chr7:140440400-140476400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr7:140440600-140466400	Weak transcription	Thymus	Thymus
36	chr7:140440600-140492600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr7:140441000-140466800	Weak transcription	Stomach Smooth Muscle	stomach
38	chr7:140441400-140504000	Weak transcription	NHLF	lung
39	chr7:140444200-140485600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr7:140444400-140466600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr7:140445600-140466600	Weak transcription	Spleen	Spleen
42	chr7:140446000-140467000	Weak transcription	HSMMtube	muscle
43	chr7:140446000-140472800	Weak transcription	Fetal Heart	heart
44	chr7:140446200-140474800	Weak transcription	HSMM	muscle
45	chr7:140447200-140467000	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr7:140448000-140473400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr7:140449200-140466800	Weak transcription	Duodenum Mucosa	Duodenum
48	chr7:140449200-140474600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr7:140449400-140468800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr7:140449800-140466400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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