Variant report

Variant	rs10233433
Chromosome Location	chr7:121721201-121721202
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:121720640-121721539	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr7:121721147-121721454	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr7:121721168-121721464	H1-hESC	embryonic stem cell:	n/a	n/a
4	POLR2A	chr7:121720802-121721642	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
RNU7-154P	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1206366	1.00[ASN][1000 genomes]
rs2134059	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4140745	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6944507	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6954861	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608334	chr7:121670522-121725961	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv427803	chr7:121701581-121876302	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121684400-121734400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:121685000-121772000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr7:121685400-121725200	Weak transcription	NHEK	skin
4	chr7:121694400-121726000	Weak transcription	Fetal Brain Male	brain
5	chr7:121703400-121755800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr7:121704600-121725200	Weak transcription	HSMMtube	muscle
7	chr7:121705800-121724400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr7:121713600-121732000	Strong transcription	Liver	Liver
9	chr7:121713800-121731800	Strong transcription	Stomach Smooth Muscle	stomach
10	chr7:121714000-121724000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr7:121714200-121733000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr7:121714600-121723200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr7:121714800-121721800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr7:121714800-121733200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr7:121715000-121721400	Strong transcription	Duodenum Smooth Muscle	Duodenum
16	chr7:121715200-121730200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr7:121715200-121733200	Weak transcription	NHLF	lung
18	chr7:121715200-121740200	Weak transcription	Primary hematopoietic stem cells	blood
19	chr7:121715400-121752000	Weak transcription	NH-A	brain
20	chr7:121715600-121723000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr7:121715800-121727400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr7:121715800-121735200	Weak transcription	Spleen	Spleen
23	chr7:121716000-121722800	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr7:121716000-121723600	Weak transcription	Gastric	stomach
25	chr7:121716000-121725200	Weak transcription	Esophagus	oesophagus
26	chr7:121716000-121728400	Weak transcription	HepG2	liver
27	chr7:121716000-121731800	Strong transcription	Left Ventricle	heart
28	chr7:121716000-121738400	Weak transcription	Brain Angular Gyrus	brain
29	chr7:121716000-121772000	Weak transcription	Osteobl	bone
30	chr7:121716000-121775600	Weak transcription	Colon Smooth Muscle	Colon
31	chr7:121716200-121725000	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr7:121716200-121733000	Weak transcription	Duodenum Mucosa	Duodenum
33	chr7:121716200-121741000	Weak transcription	HSMM	muscle
34	chr7:121716200-121758200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr7:121716400-121721600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr7:121716400-121721600	Strong transcription	Skeletal Muscle Female	skeletal muscle
37	chr7:121716400-121726400	Strong transcription	Adipose Nuclei	Adipose
38	chr7:121716600-121721600	Strong transcription	Fetal Muscle Trunk	muscle
39	chr7:121716600-121721600	Strong transcription	Ovary	ovary
40	chr7:121716600-121722600	Strong transcription	Fetal Muscle Leg	muscle
41	chr7:121716800-121722600	Strong transcription	Skeletal Muscle Male	skeletal muscle
42	chr7:121717000-121722200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr7:121717000-121722400	Strong transcription	HUES6 Cell Line	embryonic stem cell
44	chr7:121717200-121723000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr7:121717400-121722600	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr7:121717600-121743200	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr7:121717800-121723000	Strong transcription	HUES48 Cell Line	embryonic stem cell
48	chr7:121717800-121744400	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr7:121718000-121721800	Strong transcription	ES-I3 Cell Line	embryonic stem cell
50	chr7:121718000-121722400	Strong transcription	iPS-18 Cell Line	embryonic stem cell

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