Variant report

Variant	rs10234185
Chromosome Location	chr7:12298311-12298312
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10231252	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10245921	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1440030	0.82[CHB][hapmap];0.88[CHD][hapmap];0.82[YRI][hapmap]
rs1440031	0.86[CHB][hapmap];0.82[YRI][hapmap]
rs1440032	0.86[CHB][hapmap]
rs1861310	0.81[CHB][hapmap]
rs2024439	0.80[CHB][hapmap]
rs2110803	0.82[CHB][hapmap];0.90[CHD][hapmap]
rs2192828	0.82[CHB][hapmap];0.90[CHD][hapmap];0.82[YRI][hapmap]
rs2356170	0.86[CHB][hapmap];0.81[JPT][hapmap];0.82[YRI][hapmap]
rs3815528	0.86[CHB][hapmap];0.90[CHD][hapmap]
rs4532495	0.82[YRI][hapmap]
rs6460910	1.00[ASW][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6460929	0.86[CHB][hapmap];0.90[CHD][hapmap];0.82[YRI][hapmap]
rs6967385	0.86[CHD][hapmap];0.82[YRI][hapmap]
rs6972134	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv534432	chr7:12148960-12693032	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1024554	chr7:12214722-12967418	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv538735	chr7:12214722-12967418	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
5	nsv1033704	chr7:12286225-12355773	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:12297000-12298600	Flanking Active TSS	Dnd41	blood
2	chr7:12297400-12298400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr7:12297400-12298800	Weak transcription	K562	blood
4	chr7:12297600-12299200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr7:12297800-12298600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
6	chr7:12297800-12299000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr7:12297800-12299800	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr7:12298000-12298600	Enhancers	Primary T cells from cord blood	blood
9	chr7:12298000-12298800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr7:12298000-12299000	Enhancers	GM12878-XiMat	blood
11	chr7:12298000-12299200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr7:12298200-12298400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
13	chr7:12298200-12298800	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr7:12298200-12299000	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr7:12298200-12300400	Enhancers	Primary T helper cells PMA-I stimulated	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links