Variant report
Variant | rs10234296 |
---|---|
Chromosome Location | chr7:108865131-108865132 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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rs_ID | r2[population] |
---|---|
rs10227703 | 0.90[EUR][1000 genomes] |
rs10233280 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs10262800 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs10263302 | 0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs10263638 | 0.81[EUR][1000 genomes] |
rs10263650 | 0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs10279527 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs12113204 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs28534867 | 0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6466267 | 0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6954533 | 0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7384147 | 0.85[AFR][1000 genomes] |
rs7384220 | 0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7782164 | 0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs7791798 | 0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7801323 | 0.90[AFR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv831091 | chr7:108756218-108923644 | Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
2 | nsv1018586 | chr7:108759240-109034145 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
3 | nsv429794 | chr7:108763098-109003574 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
4 | nsv1016803 | chr7:108786402-109013227 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
5 | nsv539054 | chr7:108786402-109013227 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
6 | nsv831094 | chr7:108806619-108981593 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:108864600-108865200 | Enhancers | iPS-18 Cell Line | embryonic stem cell |