Variant report

Variant	rs10234486
Chromosome Location	chr7:78129260-78129261
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10241051	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10249629	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10268479	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1075007	0.82[EUR][1000 genomes]
rs13244349	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61541276	0.89[ASN][1000 genomes]
rs7804616	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78119400-78130200	Weak transcription	Aorta	Aorta
2	chr7:78119600-78145600	Weak transcription	Ovary	ovary
3	chr7:78119800-78132400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr7:78122000-78130400	Weak transcription	Brain Germinal Matrix	brain
5	chr7:78122600-78143800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr7:78126200-78143800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr7:78126400-78130800	Weak transcription	Brain Angular Gyrus	brain
8	chr7:78127800-78140000	Weak transcription	Brain Hippocampus Middle	brain
9	chr7:78128200-78144000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr7:78128200-78145800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr7:78128400-78129600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr7:78128400-78129600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr7:78128400-78129800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr7:78128400-78142600	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr7:78128400-78144000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr7:78128400-78144000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr7:78128600-78140200	Weak transcription	Brain Substantia Nigra	brain
18	chr7:78128600-78142600	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr7:78128600-78145800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr7:78128800-78158400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr7:78129000-78144000	Weak transcription	Pancreas	Pancrea
22	chr7:78129200-78129600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr7:78129200-78129800	Strong transcription	HUES48 Cell Line	embryonic stem cell
24	chr7:78129200-78129800	Enhancers	Osteobl	bone

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