Variant report

Variant	rs10234888
Chromosome Location	chr7:136993927-136993928
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10235309	1.00[AMR][1000 genomes]
rs12386698	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs13438618	1.00[AMR][1000 genomes]
rs28378732	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831149	chr7:136831665-137006468	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv889239	chr7:136923730-136994013	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv889240	chr7:136972027-137038092	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv889241	chr7:136976713-137038092	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136982800-137008400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:136990000-136997800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr7:136991200-137001400	Weak transcription	Fetal Stomach	stomach
4	chr7:136991400-137001200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr7:136991600-137013000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:136991800-136994200	Weak transcription	Aorta	Aorta
7	chr7:136991800-136997600	Weak transcription	Fetal Muscle Leg	muscle
8	chr7:136991800-136997800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr7:136991800-137001200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr7:136992800-136996200	Weak transcription	Brain Angular Gyrus	brain
11	chr7:136992800-136996200	Weak transcription	Brain Anterior Caudate	brain
12	chr7:136992800-136997800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr7:136992800-137001400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:136993200-137007000	Genic enhancers	Cortex derived primary cultured neurospheres	brain
15	chr7:136993400-136996000	Weak transcription	Brain Hippocampus Middle	brain
16	chr7:136993400-136996200	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr7:136993400-136998400	Weak transcription	Brain Cingulate Gyrus	brain
18	chr7:136993600-136994600	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr7:136993600-136995800	Weak transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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