Variant report
| Variant | rs10234932 |
|---|---|
| Chromosome Location | chr7:138033127-138033128 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000122779 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs62488604 | 0.81[EUR][1000 genomes] |
| rs62488609 | 0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs62488610 | 0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs62488611 | 0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs62488612 | 0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs62488628 | 0.91[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs62488629 | 0.91[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs62488630 | 0.91[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs62488631 | 0.91[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs62488632 | 0.91[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs62488636 | 0.91[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs62488638 | 0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs62488640 | 0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs62488648 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73157993 | 0.81[EUR][1000 genomes] |
| rs7795686 | 0.81[EUR][1000 genomes] |
| rs9691793 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv34048 | chr7:137724092-138213119 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 35 gene(s) | inside rSNPs | diseases |
| 2 | esv3348355 | chr7:138022746-138072487 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
