Variant report

Variant	rs10235361
Chromosome Location	chr7:83589079-83589080
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:83580423..83584240-chr7:83586287..83589174,3	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10236769	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10246414	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10282146	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17158388	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28408929	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28645480	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35026047	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6945668	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6964737	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7786275	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7801026	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7802100	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7809708	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9656560	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607707	chr7:83381032-83646816	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv888620	chr7:83459908-83593805	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv888622	chr7:83526743-83631376	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1020784	chr7:83577402-83687108	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83579200-83590400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr7:83584600-83593000	Weak transcription	NHLF	lung
3	chr7:83585000-83590200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr7:83585600-83597800	Weak transcription	Gastric	stomach
5	chr7:83586000-83590600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr7:83586400-83590200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr7:83586600-83590000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr7:83586600-83590200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr7:83586800-83590600	Weak transcription	Fetal Lung	lung
10	chr7:83586800-83592800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:83587600-83589800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr7:83587600-83593000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr7:83587800-83590600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr7:83588000-83592600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr7:83588000-83593800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:83588200-83590000	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr7:83588200-83605200	Weak transcription	Colon Smooth Muscle	Colon
18	chr7:83588400-83589200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr7:83588600-83592800	Strong transcription	NHDF-Ad	bronchial
20	chr7:83588800-83590400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr7:83588800-83590400	Weak transcription	Fetal Kidney	kidney
22	chr7:83588800-83590400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr7:83588800-83599400	Weak transcription	Fetal Brain Male	brain
24	chr7:83588800-83624600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr7:83589000-83590400	Weak transcription	Fetal Brain Female	brain
26	chr7:83589000-83590600	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr7:83589000-83590600	Weak transcription	Fetal Muscle Trunk	muscle
28	chr7:83589000-83590600	Weak transcription	Fetal Muscle Leg	muscle
29	chr7:83589000-83605000	Weak transcription	Hela-S3	cervix
30	chr7:83589000-83654600	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links