Variant report

Variant	rs10235543
Chromosome Location	chr7:69924343-69924344
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:69923675..69926139-chr7:69934403..69936695,2	K562	blood:
2	chr7:69919039..69921545-chr7:69922833..69924700,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10230101	0.93[AMR][1000 genomes]
rs10230510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10251859	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10253217	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10277221	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10486878	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12111684	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12113216	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13437849	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17141545	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17141576	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs41384947	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57762223	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58156290	0.97[ASN][1000 genomes]
rs6460546	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6460547	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6965900	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6967417	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7783204	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7786019	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7789284	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv532782	chr7:69383651-70189959	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv869342	chr7:69671501-69958576	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv888337	chr7:69707076-69952187	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv529669	chr7:69709373-69974708	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1029586	chr7:69817143-69978454	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv538927	chr7:69817143-69978454	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv888338	chr7:69860713-69952187	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv888339	chr7:69879914-69952187	ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv888340	chr7:69879914-69959059	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv1034697	chr7:69913860-70004248	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv538928	chr7:69913860-70004248	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69899000-69930200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr7:69912400-69924800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:69920200-69924600	Enhancers	Primary T cells from cord blood	blood
4	chr7:69920400-69924800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:69921600-69924800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:69922000-69925200	Enhancers	Placenta Amnion	Placenta Amnion
7	chr7:69922000-69963800	Weak transcription	Primary hematopoietic stem cells	blood
8	chr7:69922200-69924800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr7:69922200-69924800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr7:69922400-69924600	Enhancers	Fetal Stomach	stomach
11	chr7:69922600-69924800	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr7:69922600-69924800	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr7:69922600-69924800	Enhancers	Fetal Heart	heart
14	chr7:69922600-69925000	Enhancers	Fetal Intestine Large	intestine
15	chr7:69922600-69925200	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr7:69922800-69925000	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr7:69922800-69926600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr7:69923000-69925000	Enhancers	Fetal Intestine Small	intestine
19	chr7:69923200-69928600	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr7:69923200-69939800	Weak transcription	Right Ventricle	heart
21	chr7:69923400-69928000	Weak transcription	Fetal Kidney	kidney
22	chr7:69923400-69936800	Weak transcription	Fetal Brain Female	brain
23	chr7:69923600-69946600	Weak transcription	Primary B cells from cord blood	blood
24	chr7:69923800-69924600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr7:69924000-69924400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr7:69924000-69925000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr7:69924000-69925000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr7:69924000-69925000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr7:69924000-69928000	Weak transcription	Fetal Lung	lung
30	chr7:69924000-69928400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr7:69924000-69935400	Weak transcription	Fetal Muscle Leg	muscle
32	chr7:69924000-69943200	Weak transcription	Primary B cells from peripheral blood	blood
33	chr7:69924200-69925000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr7:69924200-69932000	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr7:69924200-69938400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links