Variant report

Variant	rs10235630
Chromosome Location	chr7:99466587-99466588
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:99465689..99467966-chr7:99515431..99519422,3	K562	blood:

Variant related genes	Relation type
ENSG00000146833	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1025576	0.97[ASN][1000 genomes]
rs1121592	0.86[EUR][1000 genomes]
rs1865472	0.86[EUR][1000 genomes]
rs2060452	0.97[ASN][1000 genomes]
rs2099445	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2099446	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2247762	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2527881	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2527900	0.86[EUR][1000 genomes]
rs2527902	0.86[EUR][1000 genomes]
rs2527904	0.86[EUR][1000 genomes]
rs2527908	0.86[EUR][1000 genomes]
rs2527912	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2527916	0.81[ASN][1000 genomes]
rs2527918	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2527920	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2527926	0.84[ASN][1000 genomes]
rs2527927	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2571995	0.86[EUR][1000 genomes]
rs2572000	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2572002	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2572008	0.81[ASN][1000 genomes]
rs2572009	0.81[ASN][1000 genomes]
rs2572010	0.81[ASN][1000 genomes]
rs2572011	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2572012	0.84[ASN][1000 genomes]
rs2572013	0.83[ASN][1000 genomes]
rs2572022	0.96[ASN][1000 genomes]
rs2572023	0.99[ASN][1000 genomes]
rs2572024	0.98[ASN][1000 genomes]
rs4727439	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs474229	0.97[ASN][1000 genomes]
rs503115	0.82[ASN][1000 genomes]
rs7781442	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829865	chr7:99430678-99755141	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases
2	esv1830649	chr7:99430678-99755141	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10235630	TRIM4	Cis_1M	lymphoblastoid	RTeQTL
rs10235630	TRIM4	cis	multi-tissue	Pritchard
rs10235630	TRIM4	cis	Thyroid	GTEx
rs10235630	TRIM4	cis	Artery Tibial	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99458200-99489600	Weak transcription	Pancreas	Pancrea
2	chr7:99465000-99466800	Weak transcription	Liver	Liver
3	chr7:99465200-99475400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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